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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0096380 |
| Transcript ID | Lj1g3v0096380.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g14820-like [Cicer arietinum] gi|502128053|ref|XP_004499920.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 38 | 38 | – | – | |
| PANTHER | 6 | 593 | 588 | 0 | – | |
| PANTHER | 6 | 593 | 588 | 0 | – | |
| Phobius | 21 | 33 | 13 | – | – | |
| Phobius | 34 | 38 | 5 | – | – | |
| Phobius | 39 | 691 | 653 | – | – | |
| ProSiteProfiles | 81 | 115 | 35 | 6.248 | ||
| ProSiteProfiles | 116 | 150 | 35 | 5.305 | ||
| ProSiteProfiles | 151 | 181 | 31 | 6.511 | ||
| ProSiteProfiles | 182 | 216 | 35 | 14.184 | ||
| Pfam | 182 | 228 | 47 | 8.70E-12 | ||
| TIGRFAM | 184 | 217 | 34 | 7.10E-11 | ||
| Gene3D | 193 | 212 | 20 | 4.00E-04 | ||
| ProSiteProfiles | 217 | 251 | 35 | 6.774 | ||
| Gene3D | 249 | 328 | 80 | 4.00E-04 | ||
| ProSiteProfiles | 252 | 282 | 31 | 6.774 | ||
| SUPERFAMILY | 259 | 444 | 186 | 8.34E-05 | ||
| ProSiteProfiles | 283 | 313 | 31 | 7.903 | ||
| TIGRFAM | 288 | 317 | 30 | 2.60E-04 | ||
| Pfam | 313 | 361 | 49 | 2.40E-11 | ||
| ProSiteProfiles | 314 | 348 | 35 | 12.299 | ||
| TIGRFAM | 316 | 349 | 34 | 7.20E-09 | ||
| Gene3D | 329 | 446 | 118 | 3.20E-06 | ||
| ProSiteProfiles | 349 | 383 | 35 | 6.095 | ||
| ProSiteProfiles | 384 | 414 | 31 | 8.528 | ||
| TIGRFAM | 389 | 415 | 27 | 0.0029 | ||
| Pfam | 414 | 451 | 38 | 4.00E-07 | ||
| ProSiteProfiles | 415 | 449 | 35 | 11.707 | ||
| TIGRFAM | 417 | 450 | 34 | 8.30E-07 | ||
| ProSiteProfiles | 450 | 485 | 36 | 8.068 | ||
| Pfam | 457 | 479 | 23 | 0.28 | ||
| ProSiteProfiles | 486 | 516 | 31 | 7.103 | ||
| Pfam | 489 | 513 | 25 | 0.0012 | ||
| Gene3D | 516 | 571 | 56 | 3.20E-06 | ||
| ProSiteProfiles | 518 | 548 | 31 | 5.272 | ||
| ProSiteProfiles | 552 | 586 | 35 | 5.185 | ||
| Pfam | 590 | 691 | 102 | 7.00E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v0096380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0096380.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.