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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0662090 |
| Transcript ID | Lj1g3v0662090.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Glycine max] gi|356498381|ref|XP_003518031.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 50 | 538 | 489 | 1.40E-228 | – | |
| PANTHER | 50 | 538 | 489 | 1.40E-228 | – | |
| MobiDBLite | 98 | 138 | 41 | – | – | |
| Gene3D | 203 | 273 | 71 | 5.70E-07 | ||
| ProSiteProfiles | 242 | 276 | 35 | 7.377 | ||
| Pfam | 278 | 323 | 46 | 6.20E-04 | ||
| ProSiteProfiles | 311 | 345 | 35 | 8.714 | ||
| SUPERFAMILY | 341 | 523 | 183 | 1.02E-05 | ||
| Gene3D | 344 | 517 | 174 | 5.70E-07 | ||
| ProSiteProfiles | 346 | 380 | 35 | 5.766 | ||
| ProSiteProfiles | 381 | 411 | 31 | 6.577 | ||
| ProSiteProfiles | 413 | 443 | 31 | 5.941 | ||
| ProSiteProfiles | 447 | 481 | 35 | 8.955 | ||
| Pfam | 451 | 479 | 29 | 0.0067 | ||
| TIGRFAM | 451 | 481 | 31 | 4.80E-04 | ||
| ProSiteProfiles | 482 | 517 | 36 | 9.24 | ||
| Pfam | 485 | 510 | 26 | 0.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v0662090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0662090.1, powered by CORGI.
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