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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0809690 |
| Transcript ID | Lj1g3v0809690.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera] gi|225456573|ref|XP_002265768.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 21 | 21 | – | – | |
| PANTHER | 1 | 96 | 96 | 4.00E-96 | ||
| PANTHER | 1 | 96 | 96 | 4.00E-96 | – | |
| Phobius | 1 | 42 | 42 | – | – | |
| Gene3D | 2 | 193 | 192 | 5.00E-30 | ||
| SUPERFAMILY | 2 | 195 | 194 | 5.49E-34 | – | |
| TMHMM | 2 | 19 | 18 | – | – | |
| Pfam | 35 | 194 | 160 | 5.90E-29 | ||
| Phobius | 43 | 66 | 24 | – | – | |
| Phobius | 67 | 77 | 11 | – | – | |
| TMHMM | 74 | 96 | 23 | – | – | |
| Phobius | 78 | 96 | 19 | – | – | |
| Phobius | 97 | 116 | 20 | – | – | |
| PANTHER | 112 | 197 | 86 | 4.00E-96 | ||
| PANTHER | 112 | 197 | 86 | 4.00E-96 | – | |
| TMHMM | 117 | 136 | 20 | – | – | |
| Phobius | 117 | 135 | 19 | – | – | |
| Phobius | 136 | 140 | 5 | – | – | |
| TMHMM | 141 | 160 | 20 | – | – | |
| Phobius | 141 | 160 | 20 | – | – | |
| Phobius | 161 | 171 | 11 | – | – | |
| Phobius | 172 | 192 | 21 | – | – | |
| TMHMM | 173 | 192 | 20 | – | – | |
| Phobius | 193 | 197 | 5 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj1g3v0809690.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0809690.1, powered by CORGI.
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