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Lj1g3v0998730.1

Overview

Field Value
Gene ID Lj1g3v0998730
Transcript ID Lj1g3v0998730.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: acyl-CoA-binding domain-containing protein 2-like [Glycine max] gi|356509224|ref|XP_003523351.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24119:SF0
1 46 46 2.20E-120 –
PANTHER
PTHR24119
1 46 46 2.20E-120 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 5 5 – –
Phobius
TRANSMEMBRANE
6 31 26 – –
TMHMM
TMhelix
7 29 23 – –
Phobius
CYTOPLASMIC_DOMAIN
32 355 324 – –
PANTHER
PTHR24119:SF0
65 349 285 2.20E-120 –
PANTHER
PTHR24119
65 349 285 2.20E-120 –
MobiDBLite
mobidb-lite
73 97 25 – –
Gene3D
G3DSA:1.20.80.10
103 198 96 7.10E-30
IPR014352
SUPERFAMILY
SSF47027
104 194 91 2.09E-27
IPR000582
ProSiteProfiles
PS51228
105 195 91 42.036
IPR000582
Pfam
PF00887
106 190 85 1.90E-27
IPR000582
PRINTS
PR00689
128 146 19 5.20E-09
IPR000582
PRINTS
PR00689
151 166 16 5.20E-09
IPR000582
PRINTS
PR00689
172 189 18 5.20E-09
IPR000582
SMART
SM00248
234 263 30 4300
IPR002110
ProSiteProfiles
PS50297
234 337 104 30.927
IPR020683
SUPERFAMILY
SSF48403
235 344 110 2.95E-30
IPR020683
Gene3D
G3DSA:1.25.40.20
236 344 109 2.40E-33
IPR020683
CDD
cd00204
238 344 107 5.62E-30 –
Pfam
PF12796
250 331 82 6.00E-14
IPR020683
ProSiteProfiles
PS50088
267 299 33 15.975
IPR002110
SMART
SM00248
267 296 30 8.70E-08
IPR002110
PRINTS
PR01415
268 283 16 5.60E-06
IPR002110
ProSiteProfiles
PS50088
300 332 33 11.621
IPR002110
SMART
SM00248
300 329 30 0.0098
IPR002110
PRINTS
PR01415
316 330 15 5.60E-06
IPR002110

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000062
Molecular function Fatty-acyl-CoA binding Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj1g3v0998730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0998730.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.