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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1385230 |
| Transcript ID | Lj1g3v1385230.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable cation-transporting ATPase-like [Cicer arietinum] gi|502137236|ref|XP_004503017.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | – | – | |
| TMHMM | 21 | 43 | 23 | – | – | |
| Phobius | 28 | 46 | 19 | – | – | |
| TIGRFAM | 45 | 1141 | 1097 | 0 | ||
| Phobius | 47 | 51 | 5 | – | – | |
| Phobius | 52 | 73 | 22 | – | – | |
| TMHMM | 53 | 75 | 23 | – | – | |
| PANTHER | 71 | 827 | 757 | 0 | ||
| PANTHER | 71 | 827 | 757 | 0 | – | |
| Phobius | 74 | 201 | 128 | – | – | |
| SUPERFAMILY | 166 | 253 | 88 | 5.36E-42 | – | |
| Gene3D | 201 | 387 | 187 | 7.40E-33 | ||
| Phobius | 202 | 221 | 20 | – | – | |
| Phobius | 222 | 401 | 180 | – | – | |
| Pfam | 240 | 474 | 235 | 4.80E-21 | ||
| SUPERFAMILY | 255 | 387 | 133 | 1.16E-16 | – | |
| PRINTS | 308 | 322 | 15 | 3.10E-15 | – | |
| SUPERFAMILY | 388 | 482 | 95 | 5.36E-42 | – | |
| TMHMM | 399 | 421 | 23 | – | – | |
| Phobius | 402 | 421 | 20 | – | – | |
| TIGRFAM | 403 | 513 | 111 | 1.90E-20 | ||
| Phobius | 422 | 955 | 534 | – | – | |
| SUPERFAMILY | 483 | 499 | 17 | 6.38E-29 | ||
| Pfam | 485 | 713 | 229 | 1.80E-10 | – | |
| PRINTS | 488 | 502 | 15 | 3.10E-15 | – | |
| ProSitePatterns | 490 | 496 | 7 | – | ||
| SUPERFAMILY | 494 | 678 | 185 | 1.42E-23 | ||
| Gene3D | 524 | 666 | 143 | 5.90E-25 | ||
| SUPERFAMILY | 625 | 714 | 90 | 6.38E-29 | ||
| Gene3D | 667 | 720 | 54 | 1.40E-33 | ||
| PRINTS | 690 | 700 | 11 | 3.10E-15 | – | |
| Gene3D | 758 | 829 | 72 | 1.40E-33 | ||
| TIGRFAM | 780 | 828 | 49 | 4.60E-18 | ||
| SUPERFAMILY | 782 | 833 | 52 | 6.38E-29 | ||
| ProSitePatterns | 809 | 831 | 23 | – | – | |
| PRINTS | 809 | 828 | 20 | 3.10E-15 | – | |
| MobiDBLite | 830 | 897 | 68 | – | – | |
| Coils | 889 | 909 | 21 | – | – | |
| PANTHER | 938 | 1034 | 97 | 0 | – | |
| PANTHER | 938 | 1034 | 97 | 0 | ||
| SUPERFAMILY | 945 | 1161 | 217 | 5.36E-42 | – | |
| TMHMM | 950 | 972 | 23 | – | – | |
| Phobius | 956 | 975 | 20 | – | – | |
| Phobius | 976 | 986 | 11 | – | – | |
| TMHMM | 985 | 1002 | 18 | – | – | |
| Phobius | 987 | 1005 | 19 | – | – | |
| Phobius | 1006 | 1016 | 11 | – | – | |
| TMHMM | 1017 | 1039 | 23 | – | – | |
| Phobius | 1017 | 1038 | 22 | – | – | |
| Phobius | 1039 | 1066 | 28 | – | – | |
| PANTHER | 1053 | 1163 | 111 | 0 | – | |
| PANTHER | 1053 | 1163 | 111 | 0 | ||
| Phobius | 1067 | 1086 | 20 | – | – | |
| Phobius | 1087 | 1097 | 11 | – | – | |
| Phobius | 1098 | 1118 | 21 | – | – | |
| TMHMM | 1099 | 1118 | 20 | – | – | |
| Phobius | 1119 | 1137 | 19 | – | – | |
| Phobius | 1138 | 1160 | 23 | – | – | |
| TMHMM | 1138 | 1160 | 23 | – | – | |
| Phobius | 1161 | 1184 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of Lj1g3v1385230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1385230.1, powered by CORGI.
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