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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1526210 |
| Transcript ID | Lj1g3v1526210.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g27460-like isoform X2 [Cicer arietinum] gi|502133180|ref|XP_004501675.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 27 | 27 | – | – | |
| PANTHER | 49 | 499 | 451 | 7.20E-208 | – | |
| PANTHER | 49 | 499 | 451 | 7.20E-208 | – | |
| ProSiteProfiles | 139 | 173 | 35 | 5.908 | ||
| ProSiteProfiles | 174 | 208 | 35 | 6.741 | ||
| Pfam | 176 | 222 | 47 | 4.20E-04 | ||
| Gene3D | 177 | 191 | 15 | 6.20E-07 | ||
| ProSiteProfiles | 209 | 241 | 33 | 6.149 | ||
| ProSiteProfiles | 247 | 277 | 31 | 5.7 | ||
| Gene3D | 250 | 312 | 63 | 6.20E-07 | ||
| SUPERFAMILY | 251 | 282 | 32 | 8.67E-05 | ||
| Pfam | 253 | 272 | 20 | 1.2 | ||
| ProSiteProfiles | 317 | 347 | 31 | 5.053 | ||
| SUPERFAMILY | 342 | 446 | 105 | 8.67E-05 | ||
| Gene3D | 349 | 424 | 76 | 6.20E-07 | ||
| ProSiteProfiles | 352 | 386 | 35 | 9.01 | ||
| Pfam | 357 | 376 | 20 | 0.0036 | ||
| ProSiteProfiles | 387 | 417 | 31 | 6.149 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v1526210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1526210.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.