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Lj1g3v1719010.1

Overview

Field Value
Gene ID Lj1g3v1719010
Transcript ID Lj1g3v1719010.1
Lotus japonicus genome version MG20 v3.0
Description Tetratricopeptide repeat protein [Medicago truncatula] gi|358345504|ref|XP_003636817.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.25.10.10
74 207 134 1.20E-10
IPR011989
SUPERFAMILY
SSF48371
77 199 123 1.80E-15
IPR016024
CDD
cd00020
112 199 88 9.74E-07 –
SMART
SM00185
136 177 42 4.10E-04
IPR000225
PANTHER
PTHR22904:SF381
257 544 288 5.00E-147 –
PANTHER
PTHR22904
257 544 288 5.00E-147 –
SUPERFAMILY
SSF48371
275 357 83 1.80E-15
IPR016024
Gene3D
G3DSA:1.25.10.10
317 351 35 1.20E-10
IPR011989
Coils
Coil
403 423 21 – –
SUPERFAMILY
SSF48452
436 535 100 5.00E-15
IPR011990
ProSiteProfiles
PS50293
436 508 73 9.261
IPR013026
Gene3D
G3DSA:1.25.40.10
437 535 99 7.10E-18
IPR011990
PANTHER
PTHR22904:SF381
622 648 27 5.00E-147 –
PANTHER
PTHR22904
622 648 27 5.00E-147 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj1g3v1719010.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1719010.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.