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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1788240 |
| Transcript ID | Lj1g3v1788240.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | copper P1B-ATPase [Glycine max] gi|110630091|gb|ABD64063.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | – | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| TIGRFAM | 10 | 596 | 587 | 7.00E-162 | ||
| PANTHER | 10 | 599 | 590 | 0 | – | |
| PANTHER | 10 | 599 | 590 | 0 | – | |
| Pfam | 11 | 263 | 253 | 7.00E-57 | ||
| Phobius | 11 | 18 | 8 | – | – | |
| Phobius | 19 | 22 | 4 | – | – | |
| Phobius | 23 | 175 | 153 | – | – | |
| SUPERFAMILY | 28 | 44 | 17 | 2.22E-07 | – | |
| TIGRFAM | 63 | 575 | 513 | 2.20E-71 | ||
| SUPERFAMILY | 66 | 155 | 90 | 1.20E-25 | – | |
| Gene3D | 66 | 156 | 91 | 1.70E-25 | ||
| PRINTS | 105 | 119 | 15 | 1.70E-23 | – | |
| SUPERFAMILY | 156 | 266 | 111 | 2.22E-07 | – | |
| TMHMM | 172 | 194 | 23 | – | – | |
| Phobius | 176 | 194 | 19 | – | – | |
| Phobius | 195 | 546 | 352 | – | – | |
| TMHMM | 225 | 247 | 23 | – | – | |
| Gene3D | 244 | 288 | 45 | 5.90E-44 | ||
| Pfam | 268 | 499 | 232 | 2.90E-34 | – | |
| SUPERFAMILY | 270 | 290 | 21 | 1.60E-44 | ||
| PRINTS | 272 | 286 | 15 | 1.70E-23 | – | |
| SUPERFAMILY | 274 | 367 | 94 | 6.87E-18 | ||
| ProSitePatterns | 274 | 280 | 7 | – | ||
| Gene3D | 294 | 410 | 117 | 2.30E-11 | ||
| SUPERFAMILY | 395 | 593 | 199 | 1.60E-44 | ||
| PRINTS | 408 | 419 | 12 | 1.70E-23 | – | |
| Gene3D | 411 | 555 | 145 | 5.90E-44 | ||
| CDD | 416 | 503 | 88 | 3.83E-05 | – | |
| PRINTS | 430 | 440 | 11 | 1.70E-23 | – | |
| PRINTS | 485 | 504 | 20 | 1.70E-23 | – | |
| Phobius | 547 | 566 | 20 | – | – | |
| TMHMM | 547 | 569 | 23 | – | – | |
| Phobius | 567 | 577 | 11 | – | – | |
| Phobius | 578 | 598 | 21 | – | – | |
| TMHMM | 579 | 596 | 18 | – | – | |
| Phobius | 599 | 604 | 6 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Cation-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). |
Expression pattern of Lj1g3v1788240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1788240.1, powered by CORGI.
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