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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1788240 |
| Transcript ID | Lj1g3v1788240.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | copper P1B-ATPase [Glycine max] gi|110630091|gb|ABD64063.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 258 | 258 | – | – | |
| PANTHER | 77 | 879 | 803 | 0 | – | |
| PANTHER | 77 | 879 | 803 | 0 | – | |
| ProSiteProfiles | 82 | 154 | 73 | 15.456 | ||
| SUPERFAMILY | 82 | 153 | 72 | 2.62E-10 | ||
| Gene3D | 83 | 155 | 73 | 5.30E-14 | – | |
| CDD | 85 | 153 | 69 | 8.53E-09 | ||
| Pfam | 85 | 150 | 66 | 3.90E-09 | ||
| TIGRFAM | 256 | 876 | 621 | 1.20E-163 | ||
| TMHMM | 259 | 281 | 23 | – | – | |
| Phobius | 259 | 276 | 18 | – | – | |
| Phobius | 277 | 281 | 5 | – | – | |
| Phobius | 282 | 300 | 19 | – | – | |
| SUPERFAMILY | 288 | 324 | 37 | 1.70E-07 | – | |
| Pfam | 291 | 543 | 253 | 1.50E-56 | ||
| Phobius | 301 | 455 | 155 | – | – | |
| Gene3D | 341 | 436 | 96 | 7.50E-26 | ||
| TIGRFAM | 346 | 854 | 509 | 5.10E-71 | ||
| SUPERFAMILY | 346 | 435 | 90 | 2.09E-25 | – | |
| PRINTS | 385 | 399 | 15 | 9.70E-23 | – | |
| SUPERFAMILY | 436 | 546 | 111 | 1.70E-07 | – | |
| TMHMM | 452 | 474 | 23 | – | – | |
| Phobius | 456 | 474 | 19 | – | – | |
| Phobius | 475 | 504 | 30 | – | – | |
| Phobius | 505 | 528 | 24 | – | – | |
| TMHMM | 505 | 527 | 23 | – | – | |
| Gene3D | 524 | 568 | 45 | 1.40E-43 | ||
| Phobius | 529 | 826 | 298 | – | – | |
| Pfam | 548 | 779 | 232 | 6.30E-34 | – | |
| SUPERFAMILY | 550 | 570 | 21 | 6.43E-44 | ||
| PRINTS | 552 | 566 | 15 | 9.70E-23 | – | |
| SUPERFAMILY | 554 | 647 | 94 | 1.24E-17 | ||
| ProSitePatterns | 554 | 560 | 7 | – | ||
| Gene3D | 574 | 690 | 117 | 4.30E-11 | ||
| SUPERFAMILY | 675 | 873 | 199 | 6.43E-44 | ||
| PRINTS | 688 | 699 | 12 | 9.70E-23 | – | |
| Gene3D | 691 | 835 | 145 | 1.40E-43 | ||
| CDD | 696 | 783 | 88 | 4.21E-05 | – | |
| PRINTS | 710 | 720 | 11 | 9.70E-23 | – | |
| PRINTS | 765 | 784 | 20 | 9.70E-23 | – | |
| TMHMM | 827 | 849 | 23 | – | – | |
| Phobius | 827 | 846 | 20 | – | – | |
| Phobius | 847 | 857 | 11 | – | – | |
| Phobius | 858 | 878 | 21 | – | – | |
| TMHMM | 859 | 876 | 18 | – | – | |
| Phobius | 879 | 884 | 6 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Cation-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj1g3v1788240.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1788240.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.