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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2482390 |
| Transcript ID | Lj1g3v2482390.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: elongation factor P-like [Cicer arietinum] gi|502104488|ref|XP_004492556.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 27 | 27 | – | – | |
| Phobius | 1 | 9 | 9 | – | – | |
| PANTHER | 10 | 236 | 227 | 2.40E-161 | – | |
| Phobius | 10 | 19 | 10 | – | – | |
| PANTHER | 10 | 236 | 227 | 2.40E-161 | – | |
| Phobius | 20 | 27 | 8 | – | – | |
| Phobius | 28 | 236 | 209 | – | – | |
| SUPERFAMILY | 49 | 112 | 64 | 1.65E-18 | ||
| Hamap | 52 | 236 | 185 | 45.642 | ||
| Gene3D | 54 | 114 | 61 | 4.40E-31 | ||
| TIGRFAM | 54 | 236 | 183 | 2.10E-72 | ||
| Pfam | 55 | 110 | 56 | 5.70E-25 | ||
| Gene3D | 116 | 177 | 62 | 2.60E-24 | – | |
| SUPERFAMILY | 118 | 177 | 60 | 3.90E-16 | ||
| SMART | 118 | 172 | 55 | 6.40E-23 | ||
| Pfam | 122 | 172 | 51 | 2.90E-21 | ||
| CDD | 122 | 177 | 56 | 8.20E-25 | ||
| SUPERFAMILY | 179 | 236 | 58 | 1.42E-16 | ||
| Gene3D | 179 | 236 | 58 | 1.10E-27 | – | |
| CDD | 180 | 235 | 56 | 1.42E-24 | ||
| SMART | 180 | 235 | 56 | 2.20E-30 | ||
| Pfam | 180 | 235 | 56 | 7.50E-27 | ||
| ProSitePatterns | 201 | 220 | 20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. | ||
| Biological process | Peptide biosynthetic process | The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide. |
Expression pattern of Lj1g3v2482390.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2482390.2, powered by CORGI.
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