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Lj1g3v2546340.1

Overview

Field Value
Gene ID Lj1g3v2546340
Transcript ID Lj1g3v2546340.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription initiation factor IIB-like [Fragaria vesca subsp]. vesca] gi|470137151|ref|XP_004304334.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11618:SF27
1 210 210 6.90E-121 –
PANTHER
PTHR11618
1 210 210 6.90E-121
IPR000812
Gene3D
G3DSA:1.10.472.10
3 96 94 8.60E-29
IPR013763
SUPERFAMILY
SSF47954
4 92 89 2.09E-20
IPR013763
SMART
SM00385
5 87 83 3.60E-05
IPR013763
Pfam
PF00382
7 70 64 4.80E-18
IPR013150
CDD
cd00043
7 80 74 8.46E-13 –
ProSitePatterns
PS00782
39 54 16 –
IPR023486
PRINTS
PR00685
47 66 20 3.10E-39
IPR000812
PRINTS
PR00685
74 89 16 3.10E-39
IPR000812
SUPERFAMILY
SSF47954
103 205 103 3.32E-26
IPR013763
CDD
cd00043
103 185 83 4.29E-09 –
Gene3D
G3DSA:1.10.472.10
107 206 100 7.50E-23
IPR013763
SMART
SM00385
107 186 80 5.50E-07
IPR013763
PRINTS
PR00685
108 126 19 3.10E-39
IPR000812
Pfam
PF00382
109 177 69 6.40E-09
IPR013150
PRINTS
PR00685
140 156 17 3.10E-39
IPR000812
PRINTS
PR00685
172 186 15 3.10E-39
IPR000812

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0017025
Molecular function TBP-class protein binding Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
Subterm of
GO:0070897
Biological process Transcription preinitiation complex assembly The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription.
Subterm of
Part of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v2546340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2546340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.