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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2611320 |
| Transcript ID | Lj1g3v2611320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357507065|ref|XP_003623821.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 73 | 50 | 0 | – | |
| PANTHER | 24 | 73 | 50 | 0 | – | |
| ProSiteProfiles | 38 | 68 | 31 | 9.449 | ||
| TIGRFAM | 43 | 68 | 26 | 5.80E-05 | ||
| Pfam | 43 | 68 | 26 | 1.50E-04 | ||
| Gene3D | 49 | 91 | 43 | 1.10E-09 | ||
| ProSiteProfiles | 69 | 99 | 31 | 9.657 | ||
| Pfam | 71 | 95 | 25 | 1.50E-05 | ||
| TIGRFAM | 71 | 100 | 30 | 2.30E-05 | ||
| ProSiteProfiles | 100 | 134 | 35 | 12.222 | ||
| Pfam | 101 | 146 | 46 | 1.00E-07 | ||
| TIGRFAM | 102 | 135 | 34 | 5.50E-07 | ||
| PANTHER | 105 | 339 | 235 | 0 | – | |
| PANTHER | 105 | 339 | 235 | 0 | – | |
| ProSiteProfiles | 135 | 169 | 35 | 6.226 | ||
| ProSiteProfiles | 170 | 200 | 31 | 5.744 | ||
| Gene3D | 192 | 231 | 40 | 1.10E-09 | ||
| Pfam | 202 | 249 | 48 | 5.90E-10 | ||
| ProSiteProfiles | 203 | 237 | 35 | 11.181 | ||
| TIGRFAM | 205 | 238 | 34 | 2.00E-06 | ||
| ProSiteProfiles | 273 | 303 | 31 | 8.079 | ||
| ProSiteProfiles | 304 | 338 | 35 | 10.983 | ||
| Pfam | 304 | 350 | 47 | 2.30E-09 | ||
| TIGRFAM | 306 | 339 | 34 | 4.50E-05 | ||
| ProSiteProfiles | 372 | 402 | 31 | 6.939 | ||
| PANTHER | 373 | 682 | 310 | 0 | – | |
| PANTHER | 373 | 682 | 310 | 0 | – | |
| Gene3D | 375 | 406 | 32 | 1.10E-09 | ||
| SUPERFAMILY | 382 | 427 | 46 | 6.78E-05 | ||
| Pfam | 402 | 450 | 49 | 3.70E-07 | ||
| ProSiteProfiles | 403 | 437 | 35 | 12.145 | ||
| TIGRFAM | 405 | 438 | 34 | 2.20E-07 | ||
| ProSiteProfiles | 438 | 472 | 35 | 5.952 | ||
| ProSiteProfiles | 473 | 503 | 31 | 7.07 | ||
| ProSiteProfiles | 504 | 538 | 35 | 11.729 | ||
| Pfam | 504 | 550 | 47 | 1.10E-07 | ||
| TIGRFAM | 506 | 539 | 34 | 7.40E-06 | ||
| ProSiteProfiles | 539 | 569 | 31 | 6.697 | ||
| Pfam | 571 | 602 | 32 | 1.40E-05 | ||
| ProSiteProfiles | 575 | 605 | 31 | 8.605 | ||
| Gene3D | 576 | 663 | 88 | 1.10E-09 | ||
| TIGRFAM | 579 | 603 | 25 | 1.90E-04 | ||
| SUPERFAMILY | 590 | 664 | 75 | 6.78E-05 | ||
| ProSiteProfiles | 641 | 675 | 35 | 8.144 | ||
| Pfam | 677 | 801 | 125 | 4.00E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v2611320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2611320.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.