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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2682520 |
| Transcript ID | Lj1g3v2682520.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356568407|ref|XP_003552402.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | – | – | |
| PANTHER | 1 | 91 | 91 | 1.20E-83 | ||
| PANTHER | 1 | 91 | 91 | 1.20E-83 | – | |
| MobiDBLite | 86 | 156 | 71 | – | – | |
| PANTHER | 196 | 297 | 102 | 1.20E-83 | ||
| PANTHER | 196 | 297 | 102 | 1.20E-83 | – | |
| MobiDBLite | 200 | 266 | 67 | – | – | |
| MobiDBLite | 323 | 378 | 56 | – | – | |
| SMART | 376 | 413 | 38 | 3.00E-10 | ||
| ProSiteProfiles | 377 | 413 | 37 | 19.13 | ||
| Pfam | 378 | 411 | 34 | 1.80E-09 | ||
| MobiDBLite | 414 | 476 | 63 | – | – | |
| MobiDBLite | 488 | 526 | 39 | – | – | |
| Coils | 643 | 670 | 28 | – | – | |
| PANTHER | 667 | 921 | 255 | 1.20E-83 | – | |
| PANTHER | 667 | 921 | 255 | 1.20E-83 | ||
| Coils | 797 | 817 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. | ||
| Biological process | Regulation of gene expression, epigenetic | Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence. | ||
| Biological process | ATP-dependent chromatin remodeling | Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors. |
Expression pattern of Lj1g3v2682520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2682520.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.