Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v2953650.1

Overview

Field Value
Gene ID Lj1g3v2953650
Transcript ID Lj1g3v2953650.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: translation factor GUF1 homolog, mitochondrial-like [Glycine max] gi|356530066|ref|XP_003533605.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23115
50 487 438 3.80E-240 –
PANTHER
PTHR23115:SF97
50 487 438 3.80E-240 –
Hamap
MF_00071
60 487 428 163.423
IPR006297
Gene3D
G3DSA:3.40.50.300
63 321 259 8.30E-73
IPR027417
SUPERFAMILY
SSF52540
64 278 215 7.63E-54
IPR027417
ProSiteProfiles
PS51722
65 257 193 58.304
IPR000795
TIGRFAM
TIGR01393
66 487 422 9.40E-162
IPR006297
Pfam
PF00009
67 254 188 2.80E-50 –
CDD
cd01890
68 256 189 3.36E-121 –
PRINTS
PR00315
69 82 14 1.90E-12
IPR000795
TIGRFAM
TIGR00231
70 244 175 1.00E-18
IPR005225
ProSitePatterns
PS00301
105 120 16 –
IPR031157
PRINTS
PR00315
112 120 9 1.90E-12
IPR000795
PRINTS
PR00315
147 157 11 1.90E-12
IPR000795
PRINTS
PR00315
199 208 10 1.90E-12
IPR000795
SUPERFAMILY
SSF50447
255 352 98 6.13E-16
IPR009000
CDD
cd03699
264 349 86 1.64E-42 –
Pfam
PF03144
278 348 71 1.10E-07
IPR004161
SUPERFAMILY
SSF54980
366 443 78 2.66E-13
IPR009022
Gene3D
G3DSA:3.30.70.870
366 440 75 1.00E-16 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj1g3v2953650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2953650.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.