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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004161
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 100 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.151s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0069129.1
n.a. n.a. chr0 24876359 24878394 +
2 domain predictions
1 GO term
Lj0g3v0069139.1
n.a. elongation factor 1-alpha (EF1-a) [Cicer arietinum] gi|3319882|emb|CAA06245.1| chr0 24876556 24878645 -
2 domain predictions
1 GO term
Lj0g3v0248479.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr0 128801369 128805462 -
2 domain predictions
1 GO term
Lj0g3v0270919.1
n.a. PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1| chr0 140309870 140314217 +
2 domain predictions
1 GO term
Lj0g3v0281329.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Cicer arietinum] gi|502143941|ref|XP_004505523.1| chr0 145851275 145866261 +
2 domain predictions
1 GO term
Lj0g3v0344749.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr0 180904840 180905596 +
2 domain predictions
1 GO term
Lj1g3v0296910.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1| chr1 3534273 3536548 +
2 domain predictions
1 GO term
Lj1g3v0296920.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like isoform 1 [Vitis vinifera] gi|225452282|ref|XP_002271032.1| chr1 3535434 3537275 +
2 domain predictions
1 GO term
Lj1g3v1353680.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr1 16105759 16110082 +
2 domain predictions
1 GO term
Lj1g3v1380860.1
n.a. PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Cicer arietinum] gi|502137208|ref|XP_004503008.1| chr1 16656786 16667427 -
2 domain predictions
1 GO term
Lj1g3v2953650.1
n.a. PREDICTED: translation factor GUF1 homolog, mitochondrial-like [Glycine max] gi|356530066|ref|XP_003533605.1| chr1 33587836 33593166 -
2 domain predictions
1 GO term
Lj1g3v3690420.1
n.a. PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1| chr1 42579735 42582487 +
2 domain predictions
1 GO term
Lj1g3v3975720.1
n.a. PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum] gi|502123462|ref|XP_004498119.1| chr1 46969692 46976329 -
2 domain predictions
1 GO term
Lj1g3v4408630.1
n.a. PREDICTED: elongation factor Tu, mitochondrial-like [Glycine max] gi|356572160|ref|XP_003554238.1| chr1 51422362 51426506 -
2 domain predictions
1 GO term
Lj2g3v0237250.1
n.a. PREDICTED: elongation factor 1-alpha-like [Cicer arietinum] gi|502091438|ref|XP_004489551.1| chr2 4065555 4068074 -
2 domain predictions
1 GO term
Lj2g3v0690370.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981079 +
2 domain predictions
1 GO term
Lj2g3v0690370.2
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr2 10972367 10981613 +
2 domain predictions
1 GO term
Lj3g3v0965560.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 12666294 12670036 +
2 domain predictions
1 GO term
Lj3g3v0965570.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451779|ref|XP_003596166.1| chr3 12667005 12670366 +
2 domain predictions
1 GO term
Lj3g3v0965840.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X2 [Cicer arietinum] gi|502089140|ref|XP_004488828.1| chr3 12847330 12851309 -
2 domain predictions
1 GO term
Lj3g3v0965840.2
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1| chr3 12847330 12852288 -
2 domain predictions
1 GO term
Lj3g3v2315550.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451821|ref|XP_003596187.1| chr3 28433062 28438042 -
2 domain predictions
1 GO term
Lj3g3v2316610.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 28482403 28485647 -
2 domain predictions
1 GO term
Lj3g3v2316620.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356556977|ref|XP_003546795.1| chr3 28483867 28486201 -
2 domain predictions
1 GO term
Lj4g3v1425330.1
n.a. PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max] gi|356513781|ref|XP_003525588.1| chr4 22186873 22189124 +
2 domain predictions
1 GO term
Lj4g3v1971930.1
n.a. PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cicer arietinum] gi|502151359|ref|XP_004508402.1| chr4 27386497 27391330 -
2 domain predictions
1 GO term
Lj4g3v3114310.1
n.a. PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Glycine max] gi|356527880|ref|XP_003532534.1| chr4 41964215 41967010 -
2 domain predictions
1 GO term
Lj5g3v0890580.1
n.a. PREDICTED: GTP-binding protein TypA/BipA homolog [Glycine max] gi|356500497|ref|XP_003519068.1| chr5 13167757 13175554 -
2 domain predictions
1 GO term
Lj5g3v1699430.1
n.a. PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi|356558807|ref|XP_003547694.1| chr5 24693836 24695740 -
2 domain predictions
1 GO term
Lj5g3v1953000.1
n.a. PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 5B-like [Cicer arietinum] gi|502119038|ref|XP_004496483.1| chr5 27580042 27590245 +
2 domain predictions
1 GO term
Lj6g3v1887770.1
n.a. PREDICTED: elongation factor Tu, mitochondrial-like [Cucumis sativus] gi|449436569|ref|XP_004136065.1| chr6 20955588 20958018 -
2 domain predictions
1 GO term
LotjaGi0g1v0000300.1
n.a. Elongation factor 4; TAIR: AT5G13650.1 elongation factor family protein; Swiss-Prot: sp|P72749|TYPA_SYNY3 GTP-binding protein TypA/BipA homolog; TrEMBL-Plants: tr|A0A0L9TVK2|A0A0L9TVK2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi0g1v0000300 LjG1.1_chr0 1134471 1142062 +
2 domain predictions
1 GO term
LotjaGi1g1v0198100.1
n.a. Elongation factor Tu; TAIR: AT4G20360.1 RAB GTPase homolog E1B; Swiss-Prot: sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic; TrEMBL-Plants: tr|K7KMT9|K7KMT9_SOYBN Elongation factor Tu; Found in the gene: LotjaGi1g1v0198100 LjG1.1_chr1 41024488 41027221 -
2 domain predictions
1 GO term
LotjaGi1g1v0321400.1
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214048 77219779 +
2 domain predictions
1 GO term
LotjaGi1g1v0321400.2
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77214237 77219587 +
2 domain predictions
1 GO term
LotjaGi1g1v0321400.4
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|A0A0B2R210|A0A0B2R210_GLYSO Elongation factor 2; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216023 77219294 +
2 domain predictions
1 GO term
LotjaGi1g1v0321400.5
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216036 77219294 +
2 domain predictions
1 GO term
LotjaGi1g1v0321400.6
n.a. Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321400 LjG1.1_chr1 77216831 77219294 +
2 domain predictions
1 GO term
LotjaGi1g1v0327700.1
n.a. Elongation factor 4; TAIR: AT5G08650.1 Small GTP-binding protein; Swiss-Prot: sp|A5B4D2|GUFP_VITVI Translation factor GUF1 homolog, chloroplastic; TrEMBL-Plants: tr|A0A0S3REW3|A0A0S3REW3_PHAAN Translation factor GUF1 homolog, chloroplastic; Found in the gene: LotjaGi1g1v0327700 LjG1.1_chr1 78214008 78224219 -
2 domain predictions
1 GO term
LotjaGi1g1v0500000.1
n.a. Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 LjG1.1_chr1 101609246 101619224 -
2 domain predictions
1 GO term
LotjaGi1g1v0500000.2
n.a. Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 LjG1.1_chr1 101609246 101619224 -
2 domain predictions
1 GO term
LotjaGi1g1v0500000.3
n.a. Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 LjG1.1_chr1 101613453 101619116 -
2 domain predictions
1 GO term
LotjaGi1g1v0500000.4
n.a. Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 LjG1.1_chr1 101613750 101619123 -
2 domain predictions
1 GO term
LotjaGi1g1v0500000.5
n.a. Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 LjG1.1_chr1 101615093 101619053 -
2 domain predictions
1 GO term
LotjaGi1g1v0535000.1
n.a. Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q24208|IF2G_DROME Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|C6TAN4|C6TAN4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0535000 LjG1.1_chr1 106332510 106337194 +
2 domain predictions
1 GO term
LotjaGi1g1v0535000.2
n.a. Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q24208|IF2G_DROME Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|C6TAN4|C6TAN4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0535000 LjG1.1_chr1 106333126 106336510 +
2 domain predictions
1 GO term
LotjaGi1g1v0535000.3
n.a. Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q24208|IF2G_DROME Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|C6TAN4|C6TAN4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0535000 LjG1.1_chr1 106333126 106336510 +
2 domain predictions
1 GO term
LotjaGi1g1v0600400.2
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473527 114505407 +
2 domain predictions
1 GO term
LotjaGi1g1v0600400.3
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
2 domain predictions
1 GO term
LotjaGi1g1v0600400.4
n.a. Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 LjG1.1_chr1 114473701 114504378 +
2 domain predictions
1 GO term