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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3194580 |
| Transcript ID | Lj1g3v3194580.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter B family member 20-like [Glycine max] gi|356568961|ref|XP_003552676.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 78 | 78 | – | – | |
| MobiDBLite | 1 | 59 | 59 | – | – | |
| PANTHER | 1 | 657 | 657 | 1.40E-275 | – | |
| PANTHER | 1 | 657 | 657 | 1.40E-275 | – | |
| SUPERFAMILY | 70 | 379 | 310 | 3.01E-46 | ||
| Gene3D | 70 | 383 | 314 | 1.20E-42 | – | |
| Phobius | 79 | 103 | 25 | – | – | |
| TMHMM | 79 | 101 | 23 | – | – | |
| ProSiteProfiles | 83 | 371 | 289 | 36.895 | ||
| Pfam | 86 | 354 | 269 | 5.60E-44 | ||
| Phobius | 104 | 123 | 20 | – | – | |
| Phobius | 124 | 144 | 21 | – | – | |
| TMHMM | 129 | 151 | 23 | – | – | |
| Phobius | 145 | 206 | 62 | – | – | |
| TMHMM | 204 | 223 | 20 | – | – | |
| Phobius | 207 | 223 | 17 | – | – | |
| Phobius | 224 | 229 | 6 | – | – | |
| TMHMM | 228 | 250 | 23 | – | – | |
| Phobius | 230 | 250 | 21 | – | – | |
| Coils | 250 | 270 | 21 | – | – | |
| Phobius | 251 | 302 | 52 | – | – | |
| Phobius | 303 | 330 | 28 | – | – | |
| TMHMM | 307 | 329 | 23 | – | – | |
| Phobius | 331 | 823 | 493 | – | – | |
| SUPERFAMILY | 393 | 638 | 246 | 6.35E-77 | ||
| Gene3D | 404 | 633 | 230 | 2.50E-69 | ||
| ProSiteProfiles | 404 | 639 | 236 | 21.175 | ||
| Pfam | 425 | 569 | 145 | 6.60E-25 | ||
| SMART | 431 | 610 | 180 | 2.00E-07 | ||
| MobiDBLite | 666 | 729 | 64 | – | – | |
| MobiDBLite | 743 | 809 | 67 | – | – | |
| SUPERFAMILY | 810 | 947 | 138 | 1.44E-18 | ||
| Gene3D | 814 | 948 | 135 | 2.80E-16 | – | |
| Phobius | 824 | 853 | 30 | – | – | |
| TMHMM | 828 | 850 | 23 | – | – | |
| ProSiteProfiles | 828 | 949 | 122 | 19.337 | ||
| Pfam | 833 | 948 | 116 | 1.40E-15 | ||
| Phobius | 854 | 872 | 19 | – | – | |
| TMHMM | 871 | 893 | 23 | – | – | |
| Phobius | 873 | 895 | 23 | – | – | |
| Phobius | 896 | 949 | 54 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v3194580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3194580.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.