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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3217840 |
| Transcript ID | Lj1g3v3217840.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Glycine max] gi|356567218|ref|XP_003551818.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 4 | 4 | – | – | |
| PANTHER | 2 | 31 | 30 | 0 | – | |
| PANTHER | 2 | 31 | 30 | 0 | – | |
| Phobius | 5 | 12 | 8 | – | – | |
| Phobius | 13 | 20 | 8 | – | – | |
| Phobius | 21 | 727 | 707 | – | – | |
| PANTHER | 69 | 598 | 530 | 0 | – | |
| PANTHER | 69 | 598 | 530 | 0 | – | |
| Pfam | 117 | 164 | 48 | 3.90E-09 | ||
| ProSiteProfiles | 118 | 152 | 35 | 11.466 | ||
| TIGRFAM | 121 | 153 | 33 | 8.50E-06 | ||
| ProSiteProfiles | 153 | 187 | 35 | 6.029 | ||
| ProSiteProfiles | 188 | 218 | 31 | 6.533 | ||
| Gene3D | 192 | 364 | 173 | 7.20E-06 | ||
| ProSiteProfiles | 219 | 253 | 35 | 11.148 | ||
| TIGRFAM | 221 | 255 | 35 | 1.90E-07 | ||
| Pfam | 221 | 247 | 27 | 1.80E-07 | ||
| ProSiteProfiles | 254 | 288 | 35 | 6.062 | ||
| SUPERFAMILY | 273 | 420 | 148 | 2.02E-06 | ||
| ProSiteProfiles | 289 | 319 | 31 | 5.766 | ||
| Pfam | 300 | 319 | 20 | 1 | ||
| ProSiteProfiles | 320 | 354 | 35 | 13.724 | ||
| Pfam | 320 | 359 | 40 | 8.30E-13 | ||
| TIGRFAM | 322 | 356 | 35 | 2.90E-11 | ||
| ProSiteProfiles | 390 | 420 | 31 | 7.717 | ||
| Pfam | 395 | 419 | 25 | 0.038 | ||
| Pfam | 420 | 467 | 48 | 9.00E-08 | ||
| ProSiteProfiles | 421 | 455 | 35 | 10.468 | ||
| TIGRFAM | 423 | 456 | 34 | 9.90E-04 | ||
| ProSiteProfiles | 456 | 490 | 35 | 9.876 | ||
| ProSiteProfiles | 491 | 526 | 36 | 6.314 | ||
| Pfam | 494 | 518 | 25 | 1 | ||
| ProSiteProfiles | 557 | 591 | 35 | 6.412 | ||
| Pfam | 594 | 717 | 124 | 1.80E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v3217840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3217840.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.