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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3218020 |
| Transcript ID | Lj1g3v3218020.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Glycine max] gi|356567222|ref|XP_003551820.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 46 | 206 | 161 | 0 | – | |
| PANTHER | 46 | 206 | 161 | 0 | – | |
| Pfam | 95 | 142 | 48 | 3.80E-12 | ||
| ProSiteProfiles | 96 | 130 | 35 | 12.485 | ||
| Gene3D | 99 | 130 | 32 | 3.70E-09 | ||
| SUPERFAMILY | 99 | 136 | 38 | 1.59E-06 | ||
| TIGRFAM | 99 | 131 | 33 | 8.20E-09 | ||
| ProSiteProfiles | 131 | 165 | 35 | 6.675 | ||
| Gene3D | 165 | 214 | 50 | 3.70E-09 | ||
| Pfam | 165 | 193 | 29 | 1.80E-05 | ||
| ProSiteProfiles | 166 | 196 | 31 | 9.142 | ||
| SUPERFAMILY | 171 | 224 | 54 | 1.59E-06 | ||
| TIGRFAM | 172 | 198 | 27 | 3.40E-04 | ||
| ProSiteProfiles | 197 | 231 | 35 | 11.016 | ||
| Pfam | 200 | 229 | 30 | 0.0075 | ||
| TIGRFAM | 200 | 233 | 34 | 0.0026 | ||
| ProSiteProfiles | 265 | 295 | 31 | 8.462 | ||
| Gene3D | 268 | 339 | 72 | 3.70E-09 | ||
| Pfam | 270 | 293 | 24 | 2.10E-05 | ||
| TIGRFAM | 270 | 295 | 26 | 1.10E-04 | ||
| ProSiteProfiles | 296 | 330 | 35 | 10.106 | ||
| Pfam | 298 | 328 | 31 | 1.90E-05 | ||
| TIGRFAM | 298 | 331 | 34 | 1.00E-05 | ||
| PANTHER | 306 | 432 | 127 | 0 | – | |
| PANTHER | 306 | 432 | 127 | 0 | – | |
| ProSiteProfiles | 366 | 396 | 31 | 6.752 | ||
| SUPERFAMILY | 373 | 438 | 66 | 1.59E-06 | ||
| Gene3D | 374 | 441 | 68 | 3.70E-09 | ||
| Pfam | 374 | 396 | 23 | 0.4 | ||
| ProSiteProfiles | 397 | 431 | 35 | 12.079 | ||
| Pfam | 397 | 444 | 48 | 1.80E-08 | ||
| TIGRFAM | 399 | 432 | 34 | 4.70E-07 | ||
| ProSiteProfiles | 432 | 466 | 35 | 5.119 | ||
| ProSiteProfiles | 467 | 497 | 31 | 7.147 | ||
| Gene3D | 495 | 524 | 30 | 8.00E-04 | ||
| Pfam | 498 | 544 | 47 | 9.50E-09 | ||
| ProSiteProfiles | 498 | 532 | 35 | 12.145 | ||
| PANTHER | 499 | 518 | 20 | 0 | – | |
| PANTHER | 499 | 518 | 20 | 0 | – | |
| TIGRFAM | 500 | 534 | 35 | 6.00E-08 | ||
| ProSiteProfiles | 533 | 567 | 35 | 5.316 | ||
| ProSiteProfiles | 568 | 598 | 31 | 5.755 | ||
| PANTHER | 599 | 879 | 281 | 0 | – | |
| Pfam | 599 | 645 | 47 | 3.10E-12 | ||
| PANTHER | 599 | 879 | 281 | 0 | – | |
| ProSiteProfiles | 600 | 634 | 35 | 11.926 | ||
| TIGRFAM | 602 | 635 | 34 | 2.30E-07 | ||
| ProSiteProfiles | 635 | 669 | 35 | 5.93 | ||
| ProSiteProfiles | 670 | 700 | 31 | 7.355 | ||
| Pfam | 700 | 747 | 48 | 7.10E-09 | ||
| ProSiteProfiles | 701 | 735 | 35 | 10.282 | ||
| TIGRFAM | 703 | 736 | 34 | 6.60E-06 | ||
| ProSiteProfiles | 736 | 771 | 36 | 7.837 | ||
| ProSiteProfiles | 772 | 802 | 31 | 8.221 | ||
| SUPERFAMILY | 776 | 855 | 80 | 1.59E-06 | ||
| Pfam | 776 | 801 | 26 | 0.0081 | ||
| Gene3D | 802 | 860 | 59 | 2.80E-06 | ||
| ProSiteProfiles | 838 | 872 | 35 | 8.21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v3218020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3218020.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.