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Lj1g3v3406620.1

Overview

Field Value
Gene ID Lj1g3v3406620
Transcript ID Lj1g3v3406620.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: proline-rich receptor-like protein kinase PERK5-like [Glycine max] gi|356509567|ref|XP_003523519.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 141 141 – –
MobiDBLite
mobidb-lite
1 134 134 – –
PANTHER
PTHR27001:SF55
23 98 76 1.70E-272 –
PANTHER
PTHR27001
23 98 76 1.70E-272 –
PANTHER
PTHR27001
136 173 38 1.70E-272 –
PANTHER
PTHR27001:SF55
136 173 38 1.70E-272 –
TMHMM
TMhelix
142 164 23 – –
Phobius
TRANSMEMBRANE
142 164 23 – –
Phobius
CYTOPLASMIC_DOMAIN
165 634 470 – –
PANTHER
PTHR27001
207 223 17 1.70E-272 –
PANTHER
PTHR27001:SF55
207 223 17 1.70E-272 –
MobiDBLite
mobidb-lite
212 246 35 – –
PANTHER
PTHR27001:SF55
256 555 300 1.70E-272 –
PANTHER
PTHR27001
256 555 300 1.70E-272 –
Gene3D
G3DSA:2.60.120.200
257 285 29 3.10E-08
IPR013320
SUPERFAMILY
SSF56112
257 547 291 7.69E-77
IPR011009
ProSiteProfiles
PS50011
272 551 280 36.061
IPR000719
SMART
SM00220
272 550 279 1.20E-32
IPR000719
Pfam
PF07714
275 543 269 1.70E-44
IPR001245
ProSitePatterns
PS00107
278 300 23 –
IPR017441
Gene3D
G3DSA:3.30.200.20
286 349 64 1.60E-24 –
Gene3D
G3DSA:1.10.510.10
352 545 194 1.20E-41 –
ProSitePatterns
PS00108
392 404 13 –
IPR008271
PANTHER
PTHR27001:SF55
600 621 22 1.70E-272 –
PANTHER
PTHR27001
600 621 22 1.70E-272 –
MobiDBLite
mobidb-lite
610 634 25 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v3406620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3406620.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.