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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3529490 |
| Transcript ID | Lj1g3v3529490.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase PRT1-like [Glycine max] gi|356566399|ref|XP_003551419.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 402 | 402 | 8.60E-122 | – | |
| PANTHER | 1 | 402 | 402 | 8.60E-122 | – | |
| SUPERFAMILY | 12 | 69 | 58 | 1.63E-09 | – | |
| Gene3D | 18 | 70 | 53 | 1.60E-10 | ||
| CDD | 23 | 65 | 43 | 4.08E-05 | – | |
| ProSiteProfiles | 24 | 64 | 41 | 11.353 | ||
| SMART | 24 | 63 | 40 | 1.90E-04 | ||
| MobiDBLite | 144 | 165 | 22 | – | – | |
| SUPERFAMILY | 200 | 261 | 62 | 1.47E-07 | – | |
| Gene3D | 200 | 245 | 46 | 9.70E-09 | ||
| SMART | 203 | 240 | 38 | 0.0024 | ||
| ProSiteProfiles | 203 | 241 | 39 | 10.35 | ||
| ProSitePatterns | 218 | 227 | 10 | – | ||
| SUPERFAMILY | 305 | 370 | 66 | 5.42E-17 | – | |
| ProSiteProfiles | 310 | 365 | 56 | 10.295 | ||
| SMART | 310 | 359 | 50 | 0.01 | ||
| Pfam | 312 | 351 | 40 | 3.10E-07 | ||
| MobiDBLite | 404 | 424 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj1g3v3529490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3529490.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.