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Lj1g3v3590740.1

Overview

Field Value
Gene ID Lj1g3v3590740
Transcript ID Lj1g3v3590740.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 9-like [Glycine max] gi|356567779|ref|XP_003552093.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315
1 449 449 2.80E-247 –
PANTHER
PTHR23315:SF75
1 449 449 2.80E-247 –
ProSiteProfiles
PS51698
71 145 75 37.278
IPR003613
Gene3D
G3DSA:3.30.40.10
72 143 72 2.50E-32
IPR013083
SUPERFAMILY
SSF57850
72 147 76 1.14E-27 –
Pfam
PF04564
73 142 70 1.10E-22
IPR003613
SMART
SM00504
75 138 64 1.20E-28
IPR003613
Gene3D
G3DSA:1.25.10.10
174 442 269 2.40E-29
IPR011989
CDD
cd00020
174 280 107 8.68E-06 –
SUPERFAMILY
SSF48371
174 443 270 4.68E-32
IPR016024
CDD
cd00020
249 360 112 1.57E-04 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj1g3v3590740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3590740.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.