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Lj1g3v3690180.1

Overview

Field Value
Gene ID Lj1g3v3690180
Transcript ID Lj1g3v3690180.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description homocitrate synthase [Lotus japonicus] gi|268607430|dbj|BAI49592.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10277:SF9
15 547 533 2.90E-280 –
PANTHER
PTHR10277
15 547 533 2.90E-280 –
Gene3D
G3DSA:3.20.20.70
16 387 372 6.80E-141
IPR013785
SUPERFAMILY
SSF51569
29 328 300 1.72E-86 –
TIGRFAM
TIGR00973
31 540 510 1.20E-184
IPR005671
ProSiteProfiles
PS50991
31 304 274 41.134
IPR000891
Pfam
PF00682
31 310 280 1.00E-88
IPR000891
CDD
cd07940
33 312 280 2.95E-159 –
ProSitePatterns
PS00815
38 54 17 –
IPR002034
ProSitePatterns
PS00816
234 247 14 –
IPR002034
Coils
Coil
374 394 21 – –
SMART
SM00917
409 543 135 9.00E-21
IPR013709
Pfam
PF08502
410 543 134 1.80E-34
IPR013709
SUPERFAMILY
SSF110921
443 542 100 5.23E-17
IPR013709

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0003852
Molecular function 2-isopropylmalate synthase activity Catalysis of the reaction: 3-methyl-2-oxobutanoate + acetyl-CoA + H(2)O = (2S)-2-isopropylmalate + CoA + H(+).
Subterm of
GO:0009098
Biological process Leucine biosynthetic process The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0046912
Molecular function Transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj1g3v3690180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3690180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.