Domain Predictions — View

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PS00816

Source: ProSitePatterns

Description

Alpha-isopropylmalate and homocitrate synthases signature 2.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0019752 View details of GO:0019752 AmiGO InterPro QuickGO	Biological process	Carboxylic acid metabolic process	The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).	Subterm of GO:0043436
GO:0046912 View details of GO:0046912 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer.	Subterm of GO:0016746

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3690020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Homocitrate synthase [Lotus japonicus] gi\|268607430\|dbj\|BAI49592.1\|	Domains G3DSA:3.20.20.70 IPR000891 IPR002034 IPR013709 IPR013785 PF00682 PF08502 PS00815 PS00816 PS50991 PTHR10277 PTHR10277:SF9 SM00917 SSF110921 SSF51569 cd07940	16
Lj1g3v3690020.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Homocitrate synthase [Lotus japonicus] gi\|268607430\|dbj\|BAI49592.1\|	Domains G3DSA:3.20.20.70 IPR000891 IPR002034 IPR013709 IPR013785 PF00682 PF08502 PS00815 PS00816 PS50991 PTHR10277 PTHR10277:SF42 SSF51569 cd07940	14
Lj1g3v3690020.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Homocitrate synthase [Lotus japonicus] gi\|268607430\|dbj\|BAI49592.1\|	Domains G3DSA:3.20.20.70 IPR000891 IPR002034 IPR013785 PF00682 PS00815 PS00816 PS50991 PTHR10277 PTHR10277:SF42 SSF51569 cd07940	12
Lj1g3v3690180.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Homocitrate synthase [Lotus japonicus] gi\|268607430\|dbj\|BAI49592.1\|	Domains Coil G3DSA:3.20.20.70 IPR000891 IPR002034 IPR005671 IPR013709 IPR013785 PF00682 PF08502 PS00815 PS00816 PS50991 PTHR10277 PTHR10277:SF9 SM00917 SSF110921 SSF51569 TIGR00973 cd07940	19
Lj1g3v3690180.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Homocitrate synthase [Lotus japonicus] gi\|268607430\|dbj\|BAI49592.1\|	Domains Coil G3DSA:3.20.20.70 IPR000891 IPR002034 IPR013785 PF00682 PS00815 PS00816 PS50991 PTHR10277 PTHR10277:SF42 SSF51569 cd07940	13
LotjaGi1g1v0613100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	2-isopropylmalate synthase; TAIR: AT1G74040.1 2-isopropylmalate synthase 1; Swiss-Prot: sp\|Q39891\|LEU1_SOYBN Probable 2-isopropylmalate synthase; TrEMBL-Plants: tr\|D0VY45\|D0VY45_LOTJA Homocitrate synthase; Found in the gene: LotjaGi1g1v0613100	Domains Coil G3DSA:1.10.238.260 G3DSA:3.20.20.70 IPR000891 IPR002034 IPR013709 IPR013785 IPR036230 PF00682 PF08502 PS00815 PS00816 PS50991 PTHR10277 PTHR10277:SF61 SM00917 SSF110921 SSF51569 cd07940	19
LotjaGi1g1v0613300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	2-isopropylmalate synthase; TAIR: AT1G74040.1 2-isopropylmalate synthase 1; Swiss-Prot: sp\|Q39891\|LEU1_SOYBN Probable 2-isopropylmalate synthase; TrEMBL-Plants: tr\|D0VY45\|D0VY45_LOTJA Homocitrate synthase; Found in the gene: LotjaGi1g1v0613300	Domains Coil G3DSA:1.10.238.260 G3DSA:3.20.20.70 G3DSA:3.30.160.270 IPR000891 IPR002034 IPR005671 IPR013709 IPR013785 IPR036230 PF00682 PF08502 PS00815 PS00816 PS50991 PTHR10277 PTHR10277:SF61 SM00917 SSF110921 SSF51569 TIGR00973 cd07940	22
LotjaGi1g1v0613400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	2-isopropylmalate synthase; TAIR: AT1G74040.1 2-isopropylmalate synthase 1; Swiss-Prot: sp\|Q39891\|LEU1_SOYBN Probable 2-isopropylmalate synthase; TrEMBL-Plants: tr\|D0VY45\|D0VY45_LOTJA Homocitrate synthase; Found in the gene: LotjaGi1g1v0613400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.238.260 G3DSA:3.20.20.70 G3DSA:3.30.160.270 IPR000891 IPR002034 IPR005671 IPR013709 IPR013785 IPR036230 NON_CYTOPLASMIC_DOMAIN PF00682 PF08502 PS00815 PS00816 PS50991 PTHR10277 PTHR10277:SF61 SM00917 SSF110921 SSF51569 TIGR00973 TMhelix TRANSMEMBRANE cd07940	26
LotjaGi1g1v0613400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	2-isopropylmalate synthase; TAIR: AT1G74040.1 2-isopropylmalate synthase 1; Swiss-Prot: sp\|Q39891\|LEU1_SOYBN Probable 2-isopropylmalate synthase; TrEMBL-Plants: tr\|D0VY45\|D0VY45_LOTJA Homocitrate synthase; Found in the gene: LotjaGi1g1v0613400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.238.260 G3DSA:3.20.20.70 G3DSA:3.30.160.270 IPR000891 IPR002034 IPR013709 IPR013785 IPR036230 NON_CYTOPLASMIC_DOMAIN PF00682 PF08502 PS00815 PS00816 PS50991 PTHR10277 PTHR10277:SF61 SM00917 SSF110921 SSF51569 TMhelix TRANSMEMBRANE cd07940	24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd07940	CDD	1	11.11