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Lj1g3v3932450.1

Overview

Field Value
Gene ID Lj1g3v3932450
Transcript ID Lj1g3v3932450.1
Lotus japonicus genome version MG20 v3.0
Description Syntaxin-22 [Medicago truncatula] gi|357508487|ref|XP_003624532.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 244 244 – –
MobiDBLite
mobidb-lite
1 22 22 – –
PANTHER
PTHR19957
1 266 266 1.40E-166 –
PANTHER
PTHR19957:SF138
1 266 266 1.40E-166 –
SMART
SM00503
8 122 115 1.70E-16
IPR006011
SUPERFAMILY
SSF47661
19 228 210 2.24E-33
IPR010989
Gene3D
G3DSA:1.20.58.70
22 228 207 1.70E-31 –
Pfam
PF14523
25 124 100 3.10E-22 –
MobiDBLite
mobidb-lite
116 147 32 – –
SMART
SM00397
168 235 68 1.30E-15
IPR000727
ProSiteProfiles
PS50192
173 235 63 16.674
IPR000727
CDD
cd15840
176 234 59 2.45E-18 –
Pfam
PF05739
209 261 53 5.20E-11
IPR000727
Phobius
TRANSMEMBRANE
245 265 21 – –
TMHMM
TMhelix
246 265 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
266 266 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj1g3v3932450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3932450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.