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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4107150 |
| Transcript ID | Lj1g3v4107150.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Ubiquitin-associated domain-containing protein [Medicago truncatula] gi|357509361|ref|XP_003624969.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 290 | 290 | 8.20E-110 | – | |
| PANTHER | 1 | 290 | 290 | 8.20E-110 | – | |
| Phobius | 1 | 11 | 11 | – | – | |
| SUPERFAMILY | 9 | 195 | 187 | 3.92E-15 | – | |
| Phobius | 12 | 31 | 20 | – | – | |
| TMHMM | 13 | 35 | 23 | – | – | |
| Phobius | 32 | 50 | 19 | – | – | |
| Pfam | 50 | 189 | 140 | 1.60E-05 | ||
| Phobius | 51 | 77 | 27 | – | – | |
| TMHMM | 55 | 77 | 23 | – | – | |
| Phobius | 78 | 88 | 11 | – | – | |
| TMHMM | 89 | 111 | 23 | – | – | |
| Phobius | 89 | 111 | 23 | – | – | |
| Phobius | 112 | 122 | 11 | – | – | |
| Phobius | 123 | 140 | 18 | – | – | |
| TMHMM | 126 | 148 | 23 | – | – | |
| Phobius | 141 | 146 | 6 | – | – | |
| Phobius | 147 | 166 | 20 | – | – | |
| Phobius | 167 | 171 | 5 | – | – | |
| Phobius | 172 | 192 | 21 | – | – | |
| Phobius | 193 | 293 | 101 | – | – | |
| SUPERFAMILY | 241 | 290 | 50 | 4.85E-13 | ||
| Gene3D | 246 | 290 | 45 | 1.00E-11 | – | |
| ProSiteProfiles | 250 | 290 | 41 | 14.74 | ||
| SMART | 252 | 289 | 38 | 2.20E-10 | ||
| Pfam | 252 | 287 | 36 | 2.60E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj1g3v4107150.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4107150.1, powered by CORGI.
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