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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4139440 |
| Transcript ID | Lj1g3v4139440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Laccase [Medicago truncatula] gi|357492551|ref|XP_003616564.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | – | – | |
| PANTHER | 1 | 554 | 554 | 0 | – | |
| SignalP | 1 | 21 | 21 | – | – | |
| PANTHER | 1 | 554 | 554 | 0 | – | |
| Phobius | 1 | 21 | 21 | – | – | |
| TMHMM | 5 | 23 | 19 | – | – | |
| Phobius | 5 | 13 | 9 | – | – | |
| Phobius | 14 | 21 | 8 | – | – | |
| SUPERFAMILY | 15 | 166 | 152 | 5.31E-40 | ||
| Phobius | 22 | 554 | 533 | – | – | |
| TIGRFAM | 23 | 554 | 532 | 1.70E-273 | ||
| CDD | 26 | 142 | 117 | 1.93E-69 | – | |
| Pfam | 34 | 143 | 110 | 2.00E-40 | ||
| Gene3D | 36 | 162 | 127 | 3.30E-31 | ||
| SUPERFAMILY | 150 | 320 | 171 | 2.92E-40 | ||
| Pfam | 157 | 305 | 149 | 4.90E-42 | ||
| CDD | 159 | 303 | 145 | 3.10E-74 | – | |
| Gene3D | 163 | 337 | 175 | 7.40E-49 | ||
| Gene3D | 345 | 554 | 210 | 4.40E-48 | ||
| SUPERFAMILY | 346 | 554 | 209 | 8.15E-47 | ||
| CDD | 400 | 537 | 138 | 1.29E-82 | – | |
| Pfam | 405 | 536 | 132 | 1.80E-43 | ||
| ProSitePatterns | 512 | 532 | 21 | – | ||
| ProSitePatterns | 517 | 528 | 12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Lignin catabolic process | The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. | ||
| Cellular component | Apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. | ||
| Molecular function | Hydroquinone:oxygen oxidoreductase activity | Catalysis of the reaction: 4 hydroquinone + O2 = 4 benzosemiquinone + 4 H2O. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj1g3v4139440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4139440.1, powered by CORGI.
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