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Lj1g3v4139540.2

Overview

Field Value
Gene ID Lj1g3v4139540
Transcript ID Lj1g3v4139540.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor DIVARICATA-like [Cicer arietinum] gi|502097263|ref|XP_004490951.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51293
17 69 53 7.446
IPR017884
SMART
SM00717
18 70 53 2.10E-08
IPR001005
SUPERFAMILY
SSF46689
20 69 50 4.67E-11
IPR009057
CDD
cd00167
21 67 47 6.50E-07 –
Pfam
PF00249
21 66 46 1.00E-06
IPR001005
PANTHER
PTHR24078
22 143 122 9.30E-38 –
PANTHER
PTHR24078:SF261
22 143 122 9.30E-38 –
ProSiteProfiles
PS51294
91 147 57 18.507
IPR017930
SUPERFAMILY
SSF46689
92 147 56 1.93E-15
IPR009057
TIGRFAM
TIGR01557
94 146 53 1.30E-15
IPR006447
Gene3D
G3DSA:1.10.10.60
95 145 51 1.30E-12
IPR009057
SMART
SM00717
95 145 51 1.50E-10
IPR001005
Pfam
PF00249
98 142 45 6.80E-10
IPR001005
CDD
cd00167
98 142 45 2.84E-09 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj1g3v4139540.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4139540.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.