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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4241100 |
| Transcript ID | Lj1g3v4241100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like [Glycine max] gi|356503440|ref|XP_003520516.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 544 | 519 | 0 | – | |
| PANTHER | 26 | 544 | 519 | 0 | – | |
| ProSiteProfiles | 69 | 103 | 35 | 10.249 | ||
| Gene3D | 70 | 274 | 205 | 3.40E-13 | ||
| Pfam | 72 | 115 | 44 | 1.20E-11 | ||
| TIGRFAM | 72 | 105 | 34 | 1.90E-08 | ||
| SUPERFAMILY | 101 | 274 | 174 | 5.69E-07 | ||
| ProSiteProfiles | 104 | 138 | 35 | 11.849 | ||
| TIGRFAM | 107 | 138 | 32 | 2.00E-06 | ||
| ProSiteProfiles | 139 | 173 | 35 | 12.014 | ||
| Pfam | 139 | 185 | 47 | 1.50E-10 | ||
| TIGRFAM | 142 | 174 | 33 | 6.60E-08 | ||
| ProSiteProfiles | 174 | 208 | 35 | 9.449 | ||
| TIGRFAM | 176 | 210 | 35 | 5.30E-05 | ||
| ProSiteProfiles | 209 | 243 | 35 | 9.909 | ||
| Pfam | 212 | 239 | 28 | 4.20E-05 | ||
| TIGRFAM | 212 | 242 | 31 | 1.00E-07 | ||
| SUPERFAMILY | 219 | 315 | 97 | 2.09E-06 | ||
| Pfam | 243 | 292 | 50 | 3.30E-09 | ||
| ProSiteProfiles | 246 | 280 | 35 | 10.819 | ||
| TIGRFAM | 248 | 281 | 34 | 1.90E-05 | ||
| ProSiteProfiles | 281 | 315 | 35 | 11.772 | ||
| TIGRFAM | 283 | 317 | 35 | 2.50E-07 | ||
| Gene3D | 288 | 516 | 229 | 7.00E-10 | ||
| Pfam | 304 | 365 | 62 | 1.70E-16 | ||
| ProSiteProfiles | 316 | 350 | 35 | 11.378 | ||
| TIGRFAM | 318 | 351 | 34 | 1.00E-06 | ||
| ProSiteProfiles | 351 | 385 | 35 | 13.746 | ||
| TIGRFAM | 353 | 387 | 35 | 5.20E-10 | ||
| Pfam | 368 | 398 | 31 | 4.10E-04 | ||
| ProSiteProfiles | 386 | 420 | 35 | 6.193 | ||
| ProSiteProfiles | 421 | 455 | 35 | 10.654 | ||
| Pfam | 421 | 469 | 49 | 1.60E-14 | ||
| SUPERFAMILY | 422 | 516 | 95 | 2.09E-06 | ||
| TIGRFAM | 423 | 456 | 34 | 7.60E-07 | ||
| ProSiteProfiles | 456 | 490 | 35 | 10.348 | ||
| TIGRFAM | 458 | 488 | 31 | 1.50E-05 | ||
| ProSiteProfiles | 491 | 525 | 35 | 11.29 | ||
| TIGRFAM | 494 | 527 | 34 | 1.10E-09 | ||
| Pfam | 494 | 537 | 44 | 3.80E-12 | ||
| ProSiteProfiles | 526 | 560 | 35 | 6.478 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v4241100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4241100.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.