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Lj1g3v4517300.1

Overview

Field Value
Gene ID Lj1g3v4517300
Transcript ID Lj1g3v4517300.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pre-mRNA-processing factor 39-like [Cicer arietinum] gi|502110201|ref|XP_004493823.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
19 42 24 – –
MobiDBLite
mobidb-lite
54 74 21 – –
PANTHER
PTHR17204:SF5
74 792 719 0 –
PANTHER
PTHR17204
74 792 719 0 –
SUPERFAMILY
SSF48452
149 315 167 1.40E-32
IPR011990
SMART
SM00386
172 204 33 0.002
IPR003107
Gene3D
G3DSA:1.25.40.10
178 280 103 1.10E-13
IPR011990
SMART
SM00386
206 238 33 0.031
IPR003107
SMART
SM00386
241 276 36 2.20E-06
IPR003107
MobiDBLite
mobidb-lite
327 354 28 – –
SUPERFAMILY
SSF48452
366 669 304 1.20E-35
IPR011990
Gene3D
G3DSA:1.25.40.10
409 550 142 1.10E-13
IPR011990
SMART
SM00386
421 453 33 0.0013
IPR003107
ProSiteProfiles
PS50293
511 544 34 9.362
IPR013026
ProSiteProfiles
PS50005
511 544 34 8.201
IPR019734
SMART
SM00386
525 560 36 1300
IPR003107
SMART
SM00386
566 598 33 800
IPR003107

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v4517300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4517300.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.