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Lj1g3v4518320.1

Overview

Field Value
Gene ID Lj1g3v4518320
Transcript ID Lj1g3v4518320.1
Lotus japonicus genome version MG20 v3.0
Description TPR domain protein [Medicago truncatula] gi|357510173|ref|XP_003625375.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
28 49 22 – –
PANTHER
PTHR26312
215 360 146 1.00E-89 –
PANTHER
PTHR26312:SF89
215 360 146 1.00E-89 –
SMART
SM00386
241 273 33 22
IPR003107
Gene3D
G3DSA:1.25.40.10
241 345 105 3.60E-14
IPR011990
ProSiteProfiles
PS50293
241 330 90 12.73
IPR013026
SUPERFAMILY
SSF48452
242 348 107 5.54E-12
IPR011990
SMART
SM00386
276 308 33 170
IPR003107
SMART
SM00386
311 343 33 94
IPR003107

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v4518320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4518320.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.