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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4578920 |
| Transcript ID | Lj1g3v4578920.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Glycine max] gi|356572391|ref|XP_003554352.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 64 | 64 | – | – | |
| PANTHER | 14 | 83 | 70 | 2.00E-301 | – | |
| PANTHER | 14 | 83 | 70 | 2.00E-301 | – | |
| PANTHER | 155 | 448 | 294 | 2.00E-301 | – | |
| PANTHER | 155 | 448 | 294 | 2.00E-301 | – | |
| ProSiteProfiles | 207 | 241 | 35 | 5.009 | ||
| Gene3D | 227 | 340 | 114 | 8.50E-05 | ||
| Pfam | 241 | 287 | 47 | 5.20E-04 | ||
| ProSiteProfiles | 242 | 276 | 35 | 8.681 | ||
| TIGRFAM | 244 | 278 | 35 | 8.50E-04 | ||
| Pfam | 306 | 336 | 31 | 1.70E-06 | ||
| ProSiteProfiles | 310 | 340 | 31 | 9.701 | ||
| TIGRFAM | 313 | 338 | 26 | 4.00E-04 | ||
| ProSiteProfiles | 349 | 383 | 35 | 9.843 | ||
| TIGRFAM | 351 | 384 | 34 | 6.40E-05 | ||
| Pfam | 351 | 381 | 31 | 0.011 | ||
| Gene3D | 373 | 446 | 74 | 8.50E-05 | ||
| Pfam | 384 | 430 | 47 | 8.50E-13 | ||
| ProSiteProfiles | 384 | 418 | 35 | 13.077 | ||
| TIGRFAM | 386 | 420 | 35 | 2.30E-09 | ||
| ProSiteProfiles | 419 | 453 | 35 | 7.158 | ||
| TIGRFAM | 422 | 449 | 28 | 0.0025 | ||
| PANTHER | 490 | 743 | 254 | 2.00E-301 | – | |
| PANTHER | 490 | 743 | 254 | 2.00E-301 | – | |
| Pfam | 494 | 538 | 45 | 1.80E-07 | ||
| ProSiteProfiles | 495 | 527 | 33 | 5.229 | ||
| ProSiteProfiles | 528 | 562 | 35 | 10.172 | ||
| TIGRFAM | 530 | 564 | 35 | 1.90E-05 | ||
| Pfam | 551 | 608 | 58 | 9.60E-13 | ||
| Gene3D | 558 | 598 | 41 | 8.50E-05 | ||
| ProSiteProfiles | 563 | 597 | 35 | 10.391 | ||
| TIGRFAM | 566 | 599 | 34 | 1.50E-06 | ||
| ProSiteProfiles | 598 | 635 | 38 | 9.076 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v4578920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4578920.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.