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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4694400 |
| Transcript ID | Lj1g3v4694400.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Glycine max] gi|356503775|ref|XP_003520679.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 54 | 53 | 2.10E-279 | – | |
| PANTHER | 2 | 54 | 53 | 2.10E-279 | – | |
| ProSiteProfiles | 86 | 120 | 35 | 7.004 | ||
| PANTHER | 87 | 294 | 208 | 2.10E-279 | – | |
| PANTHER | 87 | 294 | 208 | 2.10E-279 | – | |
| ProSiteProfiles | 121 | 155 | 35 | 9.109 | ||
| TIGRFAM | 126 | 157 | 32 | 4.20E-04 | ||
| Pfam | 144 | 200 | 57 | 2.00E-08 | ||
| ProSiteProfiles | 156 | 190 | 35 | 7.498 | ||
| ProSiteProfiles | 191 | 225 | 35 | 12.222 | ||
| TIGRFAM | 194 | 227 | 34 | 6.00E-09 | ||
| Pfam | 225 | 274 | 50 | 6.80E-18 | ||
| ProSiteProfiles | 226 | 260 | 35 | 12.562 | ||
| TIGRFAM | 228 | 254 | 27 | 4.70E-08 | ||
| ProSiteProfiles | 261 | 295 | 35 | 12.584 | ||
| TIGRFAM | 263 | 295 | 33 | 4.30E-08 | ||
| PANTHER | 324 | 667 | 344 | 2.10E-279 | – | |
| PANTHER | 324 | 667 | 344 | 2.10E-279 | – | |
| Pfam | 325 | 349 | 25 | 6.10E-07 | ||
| ProSiteProfiles | 325 | 359 | 35 | 13.285 | ||
| TIGRFAM | 328 | 360 | 33 | 9.60E-09 | ||
| Gene3D | 332 | 586 | 255 | 1.80E-11 | ||
| SUPERFAMILY | 332 | 463 | 132 | 9.94E-08 | – | |
| Pfam | 359 | 407 | 49 | 3.30E-14 | ||
| ProSiteProfiles | 360 | 394 | 35 | 12.693 | ||
| TIGRFAM | 362 | 395 | 34 | 2.20E-08 | ||
| ProSiteProfiles | 395 | 429 | 35 | 12.419 | ||
| TIGRFAM | 397 | 430 | 34 | 4.90E-08 | ||
| SUPERFAMILY | 406 | 602 | 197 | 1.54E-07 | – | |
| ProSiteProfiles | 430 | 464 | 35 | 11.422 | ||
| Pfam | 432 | 478 | 47 | 2.40E-11 | ||
| TIGRFAM | 433 | 466 | 34 | 5.20E-08 | ||
| ProSiteProfiles | 465 | 499 | 35 | 11.104 | ||
| TIGRFAM | 467 | 501 | 35 | 1.70E-05 | ||
| Pfam | 495 | 527 | 33 | 6.20E-08 | ||
| ProSiteProfiles | 500 | 534 | 35 | 10.6 | ||
| TIGRFAM | 503 | 532 | 30 | 6.20E-05 | ||
| ProSiteProfiles | 535 | 569 | 35 | 13.033 | ||
| Pfam | 536 | 582 | 47 | 9.30E-15 | ||
| TIGRFAM | 537 | 571 | 35 | 9.00E-11 | ||
| ProSiteProfiles | 570 | 604 | 35 | 13.241 | ||
| TIGRFAM | 572 | 605 | 34 | 2.80E-09 | ||
| Gene3D | 621 | 669 | 49 | 1.80E-11 | ||
| ProSiteProfiles | 639 | 673 | 35 | 11.104 | ||
| Pfam | 641 | 671 | 31 | 2.10E-05 | ||
| TIGRFAM | 641 | 671 | 31 | 7.30E-07 | ||
| ProSiteProfiles | 674 | 708 | 35 | 10.654 | ||
| Pfam | 674 | 721 | 48 | 2.20E-11 | ||
| TIGRFAM | 676 | 708 | 33 | 2.50E-04 | ||
| PANTHER | 705 | 750 | 46 | 2.10E-279 | – | |
| PANTHER | 705 | 750 | 46 | 2.10E-279 | – | |
| ProSiteProfiles | 709 | 743 | 35 | 9.251 | ||
| TIGRFAM | 712 | 744 | 33 | 2.10E-05 | ||
| ProSiteProfiles | 744 | 778 | 35 | 5.459 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v4694400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4694400.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.