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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4717440 |
| Transcript ID | Lj1g3v4717440.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Signal recognition particle 54 kDa protein [Medicago truncatula] gi|357511109|ref|XP_003625843.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 1.60E-178 | – | |
| SUPERFAMILY | 1 | 166 | 166 | 4.99E-38 | ||
| Gene3D | 1 | 165 | 165 | 4.00E-62 | ||
| SMART | 1 | 164 | 164 | 2.40E-70 | ||
| Pfam | 1 | 164 | 164 | 4.70E-61 | ||
| PANTHER | 1 | 240 | 240 | 1.60E-178 | – | |
| ProSitePatterns | 137 | 150 | 14 | – | ||
| SUPERFAMILY | 166 | 238 | 73 | 2.45E-19 | ||
| Pfam | 195 | 238 | 44 | 1.40E-07 | ||
| Gene3D | 195 | 239 | 45 | 7.40E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Molecular function | 7S RNA binding | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). | ||
| Cellular component | Signal recognition particle | A complex of protein and RNA which facilitates translocation of proteins across membranes. |
Expression pattern of Lj1g3v4717440.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4717440.2, powered by CORGI.
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