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Lj1g3v4849460.1

Overview

Field Value
Gene ID Lj1g3v4849460
Transcript ID Lj1g3v4849460.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: suppressor protein SRP40-like [Cicer arietinum] gi|502112743|ref|XP_004494429.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 506 506 – –
PANTHER
PTHR21561:SF15
2 582 581 0 –
PANTHER
PTHR21561
2 582 581 0
IPR029523
Coils
Coil
426 463 38 – –
SMART
SM01406
437 522 86 2.40E-32
IPR006880
Pfam
PF04795
438 522 85 8.70E-22
IPR006880
Coils
Coil
475 495 21 – –
MobiDBLite
mobidb-lite
529 556 28 – –
Pfam
PF04438
538 569 32 3.30E-05
IPR007529

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006338
Biological process Chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
Subterm of
GO:0031011
Cellular component Ino80 complex A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj1g3v4849460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4849460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.