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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0146560 |
| Transcript ID | Lj2g3v0146560.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA gyrase subunit A, chloroplastic/mitochondrial-like isoform X1 [Cicer arietinum] gi|502127538|ref|XP_004499748.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 42 | 909 | 868 | 0 | – | |
| PANTHER | 42 | 909 | 868 | 0 | – | |
| MobiDBLite | 70 | 95 | 26 | – | – | |
| TIGRFAM | 99 | 913 | 815 | 2.10E-303 | – | |
| SMART | 101 | 557 | 457 | 1.60E-235 | ||
| SUPERFAMILY | 121 | 577 | 457 | 3.01E-163 | ||
| CDD | 121 | 567 | 447 | 0 | – | |
| Gene3D | 121 | 326 | 206 | 5.70E-114 | ||
| Pfam | 122 | 557 | 436 | 3.80E-149 | ||
| Gene3D | 327 | 425 | 99 | 2.40E-37 | ||
| Gene3D | 426 | 491 | 66 | 5.70E-114 | ||
| Gene3D | 591 | 913 | 323 | 2.50E-90 | – | |
| SUPERFAMILY | 593 | 913 | 321 | 2.88E-78 | – | |
| Pfam | 598 | 643 | 46 | 1.40E-07 | ||
| Pfam | 647 | 697 | 51 | 3.70E-07 | ||
| Pfam | 704 | 746 | 43 | 2.40E-07 | ||
| Pfam | 751 | 797 | 47 | 6.70E-08 | ||
| Pfam | 823 | 868 | 46 | 2.70E-08 | ||
| Pfam | 881 | 913 | 33 | 0.011 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA topoisomerase activity | Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA. | ||
| Molecular function | DNA topoisomerase type II (ATP-hydrolyzing) activity | Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
Expression pattern of Lj2g3v0146560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0146560.1, powered by CORGI.
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