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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0520130 |
| Transcript ID | Lj2g3v0520130.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g33350-like [Glycine max] gi|356561772|ref|XP_003549152.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 479 | 458 | 1.20E-246 | – | |
| PANTHER | 22 | 479 | 458 | 1.20E-246 | – | |
| ProSiteProfiles | 128 | 159 | 32 | 6.993 | ||
| Gene3D | 159 | 329 | 171 | 1.30E-11 | ||
| Pfam | 159 | 187 | 29 | 8.10E-10 | ||
| ProSiteProfiles | 160 | 194 | 35 | 12.617 | ||
| TIGRFAM | 162 | 192 | 31 | 1.90E-08 | ||
| SUPERFAMILY | 163 | 200 | 38 | 8.18E-09 | ||
| TIGRFAM | 194 | 219 | 26 | 2.80E-05 | ||
| Pfam | 194 | 219 | 26 | 3.40E-06 | ||
| ProSiteProfiles | 195 | 225 | 31 | 6.982 | ||
| ProSiteProfiles | 268 | 298 | 31 | 7.213 | ||
| Pfam | 273 | 293 | 21 | 0.25 | ||
| SUPERFAMILY | 275 | 336 | 62 | 8.18E-09 | ||
| ProSiteProfiles | 299 | 333 | 35 | 9.69 | ||
| Pfam | 301 | 347 | 47 | 5.60E-08 | ||
| TIGRFAM | 302 | 330 | 29 | 9.10E-07 | ||
| ProSiteProfiles | 336 | 371 | 36 | 7.717 | ||
| TIGRFAM | 338 | 371 | 34 | 8.20E-04 | ||
| Gene3D | 370 | 463 | 94 | 1.30E-11 | ||
| ProSiteProfiles | 372 | 402 | 31 | 7.881 | ||
| Pfam | 375 | 399 | 25 | 0.011 | ||
| TIGRFAM | 376 | 400 | 25 | 4.00E-04 | ||
| ProSiteProfiles | 404 | 434 | 31 | 5.393 | ||
| SUPERFAMILY | 408 | 462 | 55 | 8.18E-09 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0520130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0520130.1, powered by CORGI.
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