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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0536880 |
| Transcript ID | Lj2g3v0536880.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: chloride channel protein CLC-c-like isoform X1 [Cicer arietinum] gi|502162871|ref|XP_004512643.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 104 | 104 | – | – | |
| MobiDBLite | 1 | 35 | 35 | – | – | |
| PANTHER | 29 | 416 | 388 | 0 | – | |
| PANTHER | 29 | 416 | 388 | 0 | – | |
| CDD | 81 | 602 | 522 | 0 | – | |
| PRINTS | 86 | 94 | 9 | 1.80E-21 | ||
| SUPERFAMILY | 90 | 417 | 328 | 4.71E-100 | ||
| Gene3D | 97 | 417 | 321 | 1.40E-123 | ||
| Phobius | 105 | 129 | 25 | – | – | |
| TMHMM | 108 | 130 | 23 | – | – | |
| Phobius | 130 | 157 | 28 | – | – | |
| Phobius | 158 | 180 | 23 | – | – | |
| TMHMM | 166 | 188 | 23 | – | – | |
| Pfam | 168 | 583 | 416 | 7.70E-89 | ||
| Phobius | 181 | 270 | 90 | – | – | |
| PRINTS | 181 | 198 | 18 | 1.40E-64 | ||
| TMHMM | 209 | 226 | 18 | – | – | |
| PRINTS | 212 | 231 | 20 | 1.40E-64 | ||
| TMHMM | 270 | 292 | 23 | – | – | |
| Phobius | 271 | 294 | 24 | – | – | |
| PRINTS | 276 | 295 | 20 | 1.40E-64 | ||
| Phobius | 295 | 299 | 5 | – | – | |
| PRINTS | 297 | 305 | 9 | 1.80E-21 | ||
| Phobius | 300 | 320 | 21 | – | – | |
| TMHMM | 304 | 326 | 23 | – | – | |
| PRINTS | 311 | 321 | 11 | 1.80E-21 | ||
| Phobius | 321 | 356 | 36 | – | – | |
| PRINTS | 329 | 336 | 8 | 1.80E-21 | ||
| TMHMM | 355 | 377 | 23 | – | – | |
| Phobius | 357 | 377 | 21 | – | – | |
| Phobius | 378 | 396 | 19 | – | – | |
| TMHMM | 397 | 419 | 23 | – | – | |
| Phobius | 397 | 414 | 18 | – | – | |
| Phobius | 415 | 476 | 62 | – | – | |
| PANTHER | 445 | 796 | 352 | 0 | – | |
| PANTHER | 445 | 796 | 352 | 0 | – | |
| PRINTS | 453 | 469 | 17 | 1.80E-21 | ||
| Gene3D | 458 | 608 | 151 | 1.40E-123 | ||
| SUPERFAMILY | 458 | 605 | 148 | 4.71E-100 | ||
| Phobius | 477 | 499 | 23 | – | – | |
| TMHMM | 483 | 517 | 35 | – | – | |
| Phobius | 500 | 504 | 5 | – | – | |
| PRINTS | 501 | 521 | 21 | 1.40E-64 | ||
| Phobius | 505 | 521 | 17 | – | – | |
| Phobius | 522 | 532 | 11 | – | – | |
| TMHMM | 530 | 552 | 23 | – | – | |
| Phobius | 533 | 559 | 27 | – | – | |
| PRINTS | 533 | 549 | 17 | 1.40E-64 | ||
| PRINTS | 551 | 570 | 20 | 1.40E-64 | ||
| TMHMM | 556 | 578 | 23 | – | – | |
| Phobius | 560 | 564 | 5 | – | – | |
| Phobius | 565 | 585 | 21 | – | – | |
| Phobius | 586 | 797 | 212 | – | – | |
| PRINTS | 589 | 603 | 15 | 1.40E-64 | ||
| SUPERFAMILY | 606 | 780 | 175 | 7.78E-25 | – | |
| Gene3D | 610 | 680 | 71 | 4.60E-13 | – | |
| ProSiteProfiles | 614 | 683 | 70 | 8.662 | ||
| CDD | 625 | 780 | 156 | 5.21E-20 | – | |
| Gene3D | 718 | 780 | 63 | 4.60E-13 | – | |
| ProSiteProfiles | 729 | 791 | 63 | 9.676 | ||
| Pfam | 731 | 779 | 49 | 1.20E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Voltage-gated chloride channel activity | Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Chloride transport | The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v0536880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0536880.1, powered by CORGI.
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