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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0661580 |
| Transcript ID | Lj2g3v0661580.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RecName: Full=Tubulin beta-2 chain; AltName: Full=Beta-2-tubulingi|4415992|gb|AAD20179.1| beta-tubulin 2 [Eleusine indica] gi|8928425|sp|Q9ZPN9.1|TBB2_ELEIN |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 194 | 194 | 2.72E-149 | – | |
| PANTHER | 1 | 209 | 209 | 1.70E-188 | – | |
| PANTHER | 1 | 209 | 209 | 1.70E-188 | ||
| Gene3D | 1 | 31 | 31 | 8.20E-13 | ||
| SUPERFAMILY | 12 | 196 | 185 | 1.01E-80 | ||
| PRINTS | 13 | 26 | 14 | 2.40E-69 | ||
| SMART | 14 | 151 | 138 | 7.80E-42 | ||
| Pfam | 29 | 149 | 121 | 8.60E-41 | ||
| Gene3D | 32 | 141 | 110 | 2.20E-51 | ||
| PRINTS | 33 | 49 | 17 | 2.40E-69 | ||
| PRINTS | 79 | 97 | 19 | 2.40E-69 | ||
| PRINTS | 97 | 111 | 15 | 2.40E-69 | ||
| PRINTS | 115 | 138 | 24 | 2.40E-69 | ||
| Gene3D | 142 | 198 | 57 | 2.20E-35 | ||
| PRINTS | 145 | 156 | 12 | 2.40E-69 | ||
| Coils | 176 | 203 | 28 | – | – | |
| PRINTS | 180 | 198 | 19 | 2.40E-69 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of Lj2g3v0661580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0661580.1, powered by CORGI.
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