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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0933960 |
| Transcript ID | Lj2g3v0933960.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g40400-like [Glycine max] gi|356513957|ref|XP_003525674.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| Phobius | 7 | 15 | 9 | – | – | |
| PANTHER | 16 | 74 | 59 | 2.00E-293 | – | |
| PANTHER | 16 | 74 | 59 | 2.00E-293 | – | |
| Phobius | 16 | 20 | 5 | – | – | |
| Phobius | 21 | 637 | 617 | – | – | |
| PANTHER | 110 | 162 | 53 | 2.00E-293 | – | |
| PANTHER | 110 | 162 | 53 | 2.00E-293 | – | |
| Gene3D | 149 | 399 | 251 | 6.00E-06 | ||
| PANTHER | 184 | 614 | 431 | 2.00E-293 | – | |
| PANTHER | 184 | 614 | 431 | 2.00E-293 | – | |
| ProSiteProfiles | 188 | 222 | 35 | 8.221 | ||
| Pfam | 193 | 213 | 21 | 0.93 | ||
| Pfam | 222 | 271 | 50 | 8.30E-13 | ||
| ProSiteProfiles | 223 | 257 | 35 | 9.778 | ||
| TIGRFAM | 225 | 258 | 34 | 9.50E-05 | ||
| ProSiteProfiles | 258 | 292 | 35 | 11.575 | ||
| TIGRFAM | 260 | 293 | 34 | 6.10E-07 | ||
| Pfam | 292 | 340 | 49 | 9.50E-16 | ||
| ProSiteProfiles | 293 | 327 | 35 | 13.121 | ||
| TIGRFAM | 295 | 328 | 34 | 4.40E-10 | ||
| ProSiteProfiles | 328 | 362 | 35 | 12.945 | ||
| TIGRFAM | 331 | 364 | 34 | 1.80E-09 | ||
| Pfam | 362 | 411 | 50 | 6.50E-14 | ||
| ProSiteProfiles | 363 | 397 | 35 | 14.041 | ||
| TIGRFAM | 365 | 399 | 35 | 4.40E-10 | ||
| ProSiteProfiles | 398 | 432 | 35 | 9.229 | ||
| ProSiteProfiles | 433 | 467 | 35 | 8.243 | ||
| Pfam | 463 | 495 | 33 | 3.10E-06 | ||
| ProSiteProfiles | 468 | 502 | 35 | 9.69 | ||
| Gene3D | 469 | 498 | 30 | 6.00E-06 | ||
| TIGRFAM | 471 | 501 | 31 | 0.0026 | ||
| ProSiteProfiles | 503 | 537 | 35 | 11.159 | ||
| TIGRFAM | 506 | 538 | 33 | 5.00E-07 | ||
| Pfam | 506 | 551 | 46 | 1.40E-08 | ||
| ProSiteProfiles | 538 | 568 | 31 | 7.761 | ||
| ProSiteProfiles | 573 | 607 | 35 | 10.622 | ||
| TIGRFAM | 576 | 608 | 33 | 0.0011 | ||
| Pfam | 576 | 604 | 29 | 0.9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0933960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0933960.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.