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Lj2g3v1034620.1

Overview

Field Value
Gene ID Lj2g3v1034620
Transcript ID Lj2g3v1034620.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.30.29.30
6 107 102 9.90E-28
IPR011993
Pfam
PF03531
76 291 216 4.50E-81
IPR024954
SUPERFAMILY
SSF50729
207 441 235 1.35E-73
IPR011993
CDD
cd13230
208 341 134 6.56E-63 –
PRINTS
PR00887
220 236 17 1.60E-68
IPR000969
PRINTS
PR00887
242 258 17 1.60E-68
IPR000969
PRINTS
PR00887
265 281 17 1.60E-68
IPR000969
PRINTS
PR00887
330 343 14 1.60E-68
IPR000969
PANTHER
PTHR13711:SF199
338 627 290 4.60E-134 –
PANTHER
PTHR13711
338 627 290 4.60E-134 –
CDD
cd13231
343 442 100 9.68E-43 –
SMART
SM01287
349 442 94 3.20E-33
IPR013719
Pfam
PF08512
350 441 92 3.20E-22
IPR013719
PRINTS
PR00887
357 375 19 1.60E-68
IPR000969
PRINTS
PR00887
375 392 18 1.60E-68
IPR000969
PRINTS
PR00887
401 417 17 1.60E-68
IPR000969
PRINTS
PR00887
417 435 19 1.60E-68
IPR000969
MobiDBLite
mobidb-lite
469 565 97 – –
SUPERFAMILY
SSF47095
545 627 83 8.38E-27
IPR009071
Gene3D
G3DSA:1.10.30.10
556 628 73 1.10E-25
IPR009071
SMART
SM00398
557 627 71 5.60E-28
IPR009071
CDD
cd01390
558 623 66 1.73E-26 –
Pfam
PF00505
558 626 69 3.80E-23
IPR009071
ProSiteProfiles
PS50118
558 626 69 20.173
IPR009071
MobiDBLite
mobidb-lite
621 642 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj2g3v1034620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1034620.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.