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Lj2g3v1155580.1

Overview

Field Value
Gene ID Lj2g3v1155580
Transcript ID Lj2g3v1155580.1
Lotus japonicus genome version MG20 v3.0
Description Agenet and bromo-adjacent homology (BAH) domain-containing protein-like protein [Medicago truncatula] gi|357488501|ref|XP_003614538.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31917
3 676 674 2.60E-252 –
PANTHER
PTHR31917:SF9
3 676 674 2.60E-252 –
SMART
SM00439
151 269 119 1.70E-04
IPR001025
ProSiteProfiles
PS51038
151 269 119 17.569
IPR001025
Pfam
PF01426
153 246 94 5.00E-10
IPR001025
MobiDBLite
mobidb-lite
309 350 42 – –
SMART
SM00743
378 444 67 6.80E-07
IPR014002
Pfam
PF05641
383 459 77 1.70E-19
IPR008395
SMART
SM00743
467 523 57 3.60E-09
IPR014002
MobiDBLite
mobidb-lite
604 629 26 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003682
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v1155580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1155580.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.