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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1252630 |
| Transcript ID | Lj2g3v1252630.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like [Glycine max] gi|356541064|ref|XP_003539003.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| Phobius | 15 | 26 | 12 | – | – | |
| Phobius | 27 | 733 | 707 | – | – | |
| PANTHER | 73 | 134 | 62 | 0 | – | |
| PANTHER | 73 | 134 | 62 | 0 | – | |
| Coils | 86 | 119 | 34 | – | – | |
| MobiDBLite | 90 | 128 | 39 | – | – | |
| PANTHER | 200 | 696 | 497 | 0 | – | |
| PANTHER | 200 | 696 | 497 | 0 | – | |
| ProSiteProfiles | 267 | 297 | 31 | 5.064 | ||
| Pfam | 302 | 346 | 45 | 1.80E-12 | ||
| ProSiteProfiles | 302 | 336 | 35 | 12.014 | ||
| TIGRFAM | 305 | 337 | 33 | 4.10E-08 | ||
| ProSiteProfiles | 337 | 372 | 36 | 8.791 | ||
| ProSiteProfiles | 373 | 407 | 35 | 7.925 | ||
| Pfam | 379 | 405 | 27 | 0.9 | ||
| Gene3D | 407 | 460 | 54 | 6.50E-07 | ||
| ProSiteProfiles | 408 | 442 | 35 | 13.307 | ||
| Pfam | 408 | 455 | 48 | 1.20E-15 | ||
| TIGRFAM | 410 | 443 | 34 | 9.50E-10 | ||
| ProSiteProfiles | 443 | 477 | 35 | 10.095 | ||
| Pfam | 466 | 525 | 60 | 2.10E-10 | ||
| ProSiteProfiles | 478 | 513 | 36 | 10.271 | ||
| TIGRFAM | 481 | 514 | 34 | 7.80E-06 | ||
| ProSiteProfiles | 514 | 548 | 35 | 11.29 | ||
| TIGRFAM | 516 | 549 | 34 | 8.00E-07 | ||
| Gene3D | 517 | 683 | 167 | 6.50E-07 | ||
| Pfam | 538 | 593 | 56 | 1.70E-11 | ||
| ProSiteProfiles | 549 | 583 | 35 | 9.164 | ||
| TIGRFAM | 552 | 582 | 31 | 1.90E-06 | ||
| ProSiteProfiles | 584 | 618 | 35 | 10.369 | ||
| TIGRFAM | 586 | 610 | 25 | 4.80E-04 | ||
| Pfam | 618 | 666 | 49 | 2.30E-11 | ||
| ProSiteProfiles | 619 | 653 | 35 | 10.698 | ||
| TIGRFAM | 622 | 654 | 33 | 1.80E-06 | ||
| ProSiteProfiles | 654 | 688 | 35 | 10.019 | ||
| TIGRFAM | 656 | 689 | 34 | 1.40E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1252630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1252630.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.