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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1255060 |
| Transcript ID | Lj2g3v1255060.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase A catalytic subunit 6 [UDP]-forming] gi|356525568|ref|XP_003531396.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 281 | 281 | – | – | |
| Gene3D | 23 | 113 | 91 | 3.70E-32 | ||
| SUPERFAMILY | 24 | 107 | 84 | 8.36E-34 | – | |
| Pfam | 29 | 105 | 77 | 2.50E-38 | ||
| ProSiteProfiles | 39 | 85 | 47 | 8.801 | ||
| PANTHER | 76 | 624 | 549 | 0 | – | |
| PANTHER | 76 | 624 | 549 | 0 | – | |
| Phobius | 282 | 302 | 21 | – | – | |
| TMHMM | 285 | 302 | 18 | – | – | |
| Phobius | 303 | 308 | 6 | – | – | |
| TMHMM | 309 | 328 | 20 | – | – | |
| Phobius | 309 | 328 | 20 | – | – | |
| Phobius | 329 | 618 | 290 | – | – | |
| Pfam | 362 | 625 | 264 | 2.00E-161 | ||
| Phobius | 619 | 641 | 23 | – | – | |
| TMHMM | 619 | 641 | 23 | – | – | |
| Phobius | 642 | 642 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj2g3v1255060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1255060.1, powered by CORGI.
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