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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1365980 |
| Transcript ID | Lj2g3v1365980.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | germin-like protein subfamily 1 member 1-like precursor [Glycine max] gi|359806194|ref|NP_001241459.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 43 | 43 | – | – | |
| Phobius | 1 | 43 | 43 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| PANTHER | 24 | 238 | 215 | 6.40E-139 | – | |
| PANTHER | 24 | 238 | 215 | 6.40E-139 | – | |
| Phobius | 27 | 38 | 12 | – | – | |
| Phobius | 39 | 43 | 5 | – | – | |
| Phobius | 44 | 238 | 195 | – | – | |
| Gene3D | 44 | 234 | 191 | 1.40E-59 | ||
| SUPERFAMILY | 44 | 234 | 191 | 3.65E-38 | ||
| SMART | 81 | 230 | 150 | 4.80E-37 | ||
| Pfam | 82 | 229 | 148 | 4.30E-43 | ||
| ProSitePatterns | 124 | 137 | 14 | – | ||
| PRINTS | 129 | 149 | 21 | 2.30E-21 | ||
| PRINTS | 159 | 179 | 21 | 2.30E-21 | ||
| PRINTS | 193 | 208 | 16 | 2.30E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of Lj2g3v1365980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1365980.1, powered by CORGI.
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