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Lj2g3v1415400.1

Overview

Field Value
Gene ID Lj2g3v1415400
Transcript ID Lj2g3v1415400.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: AP-1 complex subunit mu-1-like [Glycine max] gi|356497456|ref|XP_003517576.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10529
1 426 426 6.60E-264 –
PIRSF
PIRSF005992
4 428 425 4.70E-142
IPR001392
Gene3D
G3DSA:3.30.450.60
5 141 137 6.30E-42 –
SUPERFAMILY
SSF64356
6 141 136 1.79E-35
IPR011012
Pfam
PF01217
7 131 125 1.00E-05
IPR022775
PRINTS
PR00314
15 35 21 2.40E-63
IPR001392
PRINTS
PR00314
103 130 28 2.40E-63
IPR001392
CDD
cd09250
156 426 271 0 –
Pfam
PF00928
159 426 268 1.80E-90
IPR028565
ProSitePatterns
PS00990
159 179 21 –
IPR018240
Gene3D
G3DSA:2.60.40.1170
159 320 162 6.00E-65 –
SUPERFAMILY
SSF49447
159 426 268 8.11E-95
IPR028565
PRINTS
PR00314
161 189 29 2.40E-63
IPR001392
ProSiteProfiles
PS51072
170 426 257 45.096
IPR028565
PRINTS
PR00314
236 263 28 2.40E-63
IPR001392
ProSitePatterns
PS00991
256 270 15 –
IPR018240
PRINTS
PR00314
305 320 16 2.40E-63
IPR001392
PRINTS
PR00314
345 356 12 2.40E-63
IPR001392

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of
GO:0030131
Cellular component Clathrin adaptor complex A membrane coat adaptor complex that links clathrin to a membrane.
Subterm of
Part of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj2g3v1415400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1415400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.