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Lj2g3v1510660.1

Overview

Field Value
Gene ID Lj2g3v1510660
Transcript ID Lj2g3v1510660.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: poly [ADP]-ribose] gi|502109943|ref|XP_004493762.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF000489
3 959 957 0
IPR008288
PANTHER
PTHR10459
5 177 173 0 –
Gene3D
G3DSA:3.30.1740.10
5 97 93 1.90E-27
IPR001510
PANTHER
PTHR10459:SF60
5 177 173 0 –
SUPERFAMILY
SSF57716
8 100 93 5.99E-22 –
ProSiteProfiles
PS50064
10 93 84 24.981
IPR001510
SMART
SM01336
13 90 78 6.50E-26
IPR001510
Pfam
PF00645
13 89 77 1.00E-15
IPR001510
Gene3D
G3DSA:3.30.1740.10
102 191 90 4.60E-19
IPR001510
SUPERFAMILY
SSF57716
105 191 87 4.32E-17 –
ProSiteProfiles
PS50064
106 186 81 12.837
IPR001510
SMART
SM01336
109 183 75 8.70E-18
IPR001510
Pfam
PF00645
109 180 72 2.20E-12
IPR001510
MobiDBLite
mobidb-lite
183 215 33 – –
PANTHER
PTHR10459
194 956 763 0 –
PANTHER
PTHR10459:SF60
194 956 763 0 –
SMART
SM01335
290 343 54 9.20E-26
IPR012982
Pfam
PF08063
292 341 50 1.70E-20
IPR012982
ProSiteProfiles
PS50172
378 468 91 14.814
IPR001357
SUPERFAMILY
SSF52113
379 467 89 4.45E-18
IPR001357
SMART
SM00292
380 458 79 4.00E-13
IPR001357
Gene3D
G3DSA:3.40.50.10190
381 468 88 2.10E-16
IPR001357
Pfam
PF00533
383 455 73 1.60E-10
IPR001357
CDD
cd00027
385 456 72 7.17E-08
IPR001357
SUPERFAMILY
SSF142921
481 595 115 4.71E-28
IPR008893
CDD
cd08001
495 597 103 3.68E-37 –
Pfam
PF05406
505 582 78 9.70E-15
IPR008893
SMART
SM00773
505 585 81 1.10E-20
IPR008893
Gene3D
G3DSA:1.20.142.10
585 741 157 1.30E-40
IPR004102
ProSiteProfiles
PS51060
612 730 119 35.008
IPR004102
Pfam
PF02877
613 733 121 3.60E-34
IPR004102
SUPERFAMILY
SSF47587
613 742 130 9.55E-32
IPR004102
CDD
cd01437
613 954 342 4.80E-148 –
ProSiteProfiles
PS51059
733 959 227 82.779
IPR012317
Pfam
PF00644
742 955 214 2.50E-67
IPR012317
SUPERFAMILY
SSF56399
742 957 216 1.01E-60 –
Gene3D
G3DSA:3.90.228.10
743 956 214 5.00E-66
IPR012317

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003950
Molecular function NAD+ ADP-ribosyltransferase activity Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006471
Biological process Protein ADP-ribosylation The transfer, from NAD, of ADP-ribose to protein amino acids.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0051287
Molecular function NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj2g3v1510660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1510660.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.