Domain Predictions — View

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PS50064

Source: ProSiteProfiles

Description

Poly(ADP-ribose) polymerase zinc finger domain profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of GO:0003676
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of GO:0046914

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0096039.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: polynucleotide 3'-phosphatase ZDP-like isoform X1 [Cicer arietinum] gi\|502177429\|ref\|XP_004516081.1\|	Domains Coil G3DSA:3.30.1740.10 G3DSA:3.40.50.1000 IPR001510 IPR006549 IPR006551 IPR013954 IPR023214 PF00645 PF08645 PS50064 PTHR12083 PTHR12083:SF6 SM01336 SSF56784 SSF57716 TIGR01662 TIGR01664 cd01427 mobidb-lite	20
Lj2g3v1510660.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: poly [ADP]-ribose] gi\|502109943\|ref\|XP_004493762.1\|	Domains G3DSA:1.20.142.10 G3DSA:3.30.1740.10 G3DSA:3.40.50.10190 G3DSA:3.90.228.10 IPR001357 IPR001510 IPR004102 IPR008288 IPR008893 IPR012317 IPR012982 PF00533 PF00644 PF00645 PF02877 PF05406 PF08063 PIRSF000489 PS50064 PS50172 PS51059 PS51060 PTHR10459 PTHR10459:SF60 SM00292 SM00773 SM01335 SM01336 SSF142921 SSF47587 SSF52113 SSF56399 SSF57716 cd00027 cd01437 cd08001 mobidb-lite	37
Lj3g3v0427320.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: polynucleotide 3'-phosphatase ZDP-like isoform X1 [Cicer arietinum] gi\|502177429\|ref\|XP_004516081.1\|	Domains Coil G3DSA:3.30.1740.10 G3DSA:3.40.50.1000 IPR001510 IPR006549 IPR006551 IPR013954 IPR023214 PF00645 PF08645 PS50064 PTHR12083 PTHR12083:SF6 SM01336 SSF56784 SSF57716 TIGR01662 TIGR01664 cd01427 mobidb-lite	20
LotjaGi1g1v0711100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp\|Q9ZP54\|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr\|A0A072U2F3\|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi1g1v0711100	Domains G3DSA:1.10.20.130 G3DSA:1.20.142.10 G3DSA:2.20.140.10 G3DSA:2.20.25.630 G3DSA:3.30.1740.10 G3DSA:3.40.50.10190 G3DSA:3.90.228.10 IPR001357 IPR001510 IPR004102 IPR008288 IPR008893 IPR012317 IPR012982 IPR036420 IPR036616 IPR036930 IPR036957 IPR038650 PF00533 PF00644 PF00645 PF02877 PF05406 PF08063 PIRSF000489 PS00347 PS50064 PS50172 PS51059 PS51060 PTHR10459 PTHR10459:SF80 SM00292 SM00773 SM01335 SM01336 SSF142921 SSF47587 SSF52113 SSF56399 SSF57716 cd01437 cd08001 cd17747 mobidb-lite	46
LotjaGi1g1v0711100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp\|Q9ZP54\|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr\|A0A072U2F3\|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi1g1v0711100	Domains G3DSA:1.10.20.130 G3DSA:1.20.142.10 G3DSA:2.20.140.10 G3DSA:2.20.25.630 G3DSA:3.30.1740.10 G3DSA:3.40.50.10190 G3DSA:3.90.228.10 IPR001357 IPR001510 IPR004102 IPR008288 IPR008893 IPR012317 IPR012982 IPR036420 IPR036616 IPR036930 IPR036957 IPR038650 PF00533 PF00644 PF00645 PF02877 PF05406 PF08063 PIRSF000489 PS50064 PS50172 PS51059 PS51060 PTHR10459 PTHR10459:SF80 SM00292 SM00773 SM01335 SM01336 SSF142921 SSF47587 SSF52113 SSF56399 SSF57716 cd01437 cd08001 cd17747 mobidb-lite	45
LotjaGi1g1v0711100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp\|Q9ZP54\|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr\|A0A072U2F3\|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi1g1v0711100	Domains G3DSA:1.10.20.130 G3DSA:1.20.142.10 G3DSA:2.20.140.10 G3DSA:2.20.25.630 G3DSA:3.30.1740.10 G3DSA:3.40.50.10190 G3DSA:3.90.228.10 IPR001357 IPR001510 IPR004102 IPR008288 IPR008893 IPR012317 IPR012982 IPR036420 IPR036616 IPR036930 IPR036957 IPR038650 PF00533 PF00644 PF00645 PF02877 PF05406 PF08063 PIRSF000489 PS50064 PS50172 PS51059 PS51060 PTHR10459 PTHR10459:SF80 SM00292 SM00773 SM01335 SM01336 SSF142921 SSF47587 SSF52113 SSF56399 SSF57716 cd01437 cd08001 cd17747 mobidb-lite	45
LotjaGi2g1v0337700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp\|Q9ZP54\|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr\|A0A072U2F3\|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi2g1v0337700	Domains G3DSA:1.10.20.130 G3DSA:1.20.142.10 G3DSA:2.20.140.10 G3DSA:2.20.25.630 G3DSA:3.30.1740.10 G3DSA:3.40.50.10190 G3DSA:3.90.228.10 IPR001357 IPR001510 IPR004102 IPR008288 IPR008893 IPR012317 IPR012982 IPR036420 IPR036616 IPR036930 IPR036957 IPR038650 PF00533 PF00644 PF00645 PF02877 PF05406 PF08063 PIRSF000489 PS50064 PS50172 PS51059 PS51060 PTHR10459 PTHR10459:SF80 SM00292 SM00773 SM01335 SM01336 SSF142921 SSF47587 SSF52113 SSF56399 SSF57716 cd01437 cd08001 cd17747 mobidb-lite	45
LotjaGi2g1v0337700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp\|Q9ZP54\|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr\|A0A072U2F3\|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi2g1v0337700	Domains G3DSA:1.10.20.130 G3DSA:1.20.142.10 G3DSA:2.20.140.10 G3DSA:2.20.25.630 G3DSA:3.30.1740.10 G3DSA:3.40.50.10190 G3DSA:3.90.228.10 IPR001357 IPR001510 IPR004102 IPR008893 IPR012317 IPR012982 IPR036420 IPR036616 IPR036930 IPR036957 IPR038650 PF00533 PF00645 PF02877 PF05406 PF08063 PS50064 PS50172 PS51059 PS51060 PTHR10459 PTHR10459:SF80 SM00292 SM00773 SM01335 SM01336 SSF142921 SSF47587 SSF52113 SSF57716 cd08001 cd17747 mobidb-lite	40
LotjaGi3g1v0041600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Poly [ADP]-ribose] polymerase; TAIR: AT3G14890.1 phosphoesterase; Swiss-Prot: sp\|Q84JE8\|ZDP_ARATH Polynucleotide 3'-phosphatase ZDP; TrEMBL-Plants: tr\|I3S6I9\|I3S6I9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0041600	Domains Coil G3DSA:3.30.1740.10 G3DSA:3.40.50.1000 IPR001510 IPR006549 IPR006551 IPR013954 IPR023214 IPR036412 IPR036957 PF00645 PF08645 PS50064 PTHR12083 PTHR12083:SF9 SM01336 SSF56784 SSF57716 TIGR01662 TIGR01664 cd01625 mobidb-lite	22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11