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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1643290 |
| Transcript ID | Lj2g3v1643290.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g02330-like [Cicer arietinum] gi|502161726|ref|XP_004512264.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 241 | 241 | 0 | – | |
| Phobius | 1 | 19 | 19 | – | – | |
| PANTHER | 1 | 241 | 241 | 0 | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| ProSiteProfiles | 5 | 39 | 35 | 10.896 | ||
| Pfam | 5 | 52 | 48 | 4.20E-15 | ||
| Phobius | 6 | 14 | 9 | – | – | |
| TIGRFAM | 7 | 41 | 35 | 2.00E-07 | ||
| Phobius | 15 | 19 | 5 | – | – | |
| Phobius | 20 | 687 | 668 | – | – | |
| ProSiteProfiles | 40 | 74 | 35 | 7.344 | ||
| ProSiteProfiles | 75 | 106 | 32 | 6.149 | ||
| Pfam | 107 | 154 | 48 | 1.50E-09 | ||
| ProSiteProfiles | 107 | 142 | 36 | 9.668 | ||
| ProSiteProfiles | 175 | 205 | 31 | 8.473 | ||
| Pfam | 180 | 205 | 26 | 9.90E-04 | ||
| ProSiteProfiles | 206 | 240 | 35 | 10.698 | ||
| Pfam | 206 | 252 | 47 | 3.60E-07 | ||
| TIGRFAM | 209 | 241 | 33 | 1.90E-06 | ||
| ProSiteProfiles | 241 | 275 | 35 | 6.928 | ||
| Gene3D | 275 | 324 | 50 | 3.40E-14 | ||
| ProSiteProfiles | 276 | 310 | 35 | 7.574 | ||
| ProSiteProfiles | 379 | 409 | 31 | 5.437 | ||
| PANTHER | 380 | 686 | 307 | 0 | – | |
| PANTHER | 380 | 686 | 307 | 0 | – | |
| Gene3D | 382 | 441 | 60 | 3.40E-14 | ||
| ProSiteProfiles | 410 | 444 | 35 | 9.788 | ||
| Pfam | 413 | 442 | 30 | 8.20E-05 | ||
| TIGRFAM | 413 | 443 | 31 | 7.00E-04 | ||
| ProSiteProfiles | 480 | 510 | 31 | 6.862 | ||
| Pfam | 485 | 505 | 21 | 0.23 | ||
| SUPERFAMILY | 495 | 535 | 41 | 2.28E-07 | ||
| Pfam | 510 | 558 | 49 | 1.10E-12 | ||
| ProSiteProfiles | 511 | 545 | 35 | 11.948 | ||
| TIGRFAM | 513 | 546 | 34 | 9.50E-07 | ||
| ProSiteProfiles | 546 | 581 | 36 | 8.221 | ||
| Gene3D | 581 | 674 | 94 | 3.40E-14 | ||
| ProSiteProfiles | 582 | 617 | 36 | 7.958 | ||
| Pfam | 585 | 607 | 23 | 0.0039 | ||
| TIGRFAM | 586 | 607 | 22 | 0.0016 | ||
| SUPERFAMILY | 597 | 671 | 75 | 2.28E-07 | ||
| ProSiteProfiles | 645 | 679 | 35 | 9.021 | ||
| Pfam | 648 | 676 | 29 | 1.2 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1643290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1643290.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.