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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1647890 |
| Transcript ID | Lj2g3v1647890.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] gi|356540844|ref|XP_003538894.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 42 | 270 | 229 | 7.90E-10 | ||
| PANTHER | 63 | 221 | 159 | 0 | – | |
| PANTHER | 63 | 221 | 159 | 0 | – | |
| Pfam | 64 | 94 | 31 | 5.80E-09 | ||
| ProSiteProfiles | 66 | 100 | 35 | 12.529 | ||
| TIGRFAM | 68 | 99 | 32 | 1.50E-08 | ||
| Pfam | 97 | 127 | 31 | 1.70E-07 | ||
| TIGRFAM | 99 | 128 | 30 | 4.60E-06 | ||
| ProSiteProfiles | 101 | 127 | 27 | 6.752 | ||
| ProSiteProfiles | 128 | 158 | 31 | 8.813 | ||
| Pfam | 130 | 153 | 24 | 0.003 | ||
| ProSiteProfiles | 160 | 190 | 31 | 9.876 | ||
| Pfam | 163 | 190 | 28 | 2.60E-06 | ||
| TIGRFAM | 163 | 192 | 30 | 9.50E-07 | ||
| ProSiteProfiles | 191 | 225 | 35 | 11.466 | ||
| Pfam | 193 | 223 | 31 | 1.50E-06 | ||
| TIGRFAM | 193 | 224 | 32 | 1.40E-05 | ||
| Pfam | 224 | 249 | 26 | 7.80E-04 | ||
| ProSiteProfiles | 226 | 252 | 27 | 5.546 | ||
| PANTHER | 249 | 350 | 102 | 0 | – | |
| PANTHER | 249 | 350 | 102 | 0 | – | |
| ProSiteProfiles | 253 | 287 | 35 | 10.6 | ||
| TIGRFAM | 255 | 285 | 31 | 1.00E-05 | ||
| Pfam | 255 | 284 | 30 | 1.30E-05 | ||
| Gene3D | 271 | 461 | 191 | 5.70E-10 | ||
| TIGRFAM | 286 | 318 | 33 | 5.40E-04 | ||
| Pfam | 286 | 313 | 28 | 2.20E-06 | ||
| ProSiteProfiles | 288 | 314 | 27 | 6.062 | ||
| SUPERFAMILY | 294 | 439 | 146 | 6.83E-07 | ||
| ProSiteProfiles | 315 | 349 | 35 | 11.389 | ||
| TIGRFAM | 317 | 347 | 31 | 2.70E-07 | ||
| Pfam | 317 | 346 | 30 | 4.10E-07 | ||
| ProSiteProfiles | 351 | 376 | 26 | 5.294 | ||
| Pfam | 351 | 373 | 23 | 0.029 | ||
| Pfam | 377 | 404 | 28 | 2.50E-10 | ||
| ProSiteProfiles | 377 | 411 | 35 | 13 | ||
| PANTHER | 378 | 437 | 60 | 0 | – | |
| PANTHER | 378 | 437 | 60 | 0 | – | |
| TIGRFAM | 379 | 408 | 30 | 6.80E-09 | ||
| Pfam | 410 | 440 | 31 | 3.50E-09 | ||
| TIGRFAM | 410 | 441 | 32 | 3.80E-08 | ||
| ProSiteProfiles | 412 | 442 | 31 | 9.219 | ||
| Pfam | 441 | 470 | 30 | 0.02 | ||
| ProSiteProfiles | 443 | 473 | 31 | 5.799 | ||
| PANTHER | 469 | 718 | 250 | 0 | – | |
| PANTHER | 469 | 718 | 250 | 0 | – | |
| ProSiteProfiles | 474 | 508 | 35 | 5.831 | ||
| ProSiteProfiles | 509 | 539 | 31 | 7.585 | ||
| Pfam | 514 | 533 | 20 | 0.021 | ||
| Pfam | 540 | 587 | 48 | 1.70E-08 | ||
| ProSiteProfiles | 540 | 574 | 35 | 11.246 | ||
| TIGRFAM | 542 | 575 | 34 | 1.30E-06 | ||
| ProSiteProfiles | 575 | 605 | 31 | 7.662 | ||
| ProSiteProfiles | 611 | 641 | 31 | 6.95 | ||
| Pfam | 614 | 638 | 25 | 0.048 | ||
| ProSiteProfiles | 677 | 707 | 31 | 7.103 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1647890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1647890.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.