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Lj2g3v1691080.2

Overview

Field Value
Gene ID Lj2g3v1691080
Transcript ID Lj2g3v1691080.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Glycine max] gi|356496629|ref|XP_003517168.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10223
1 403 403 1.30E-204
IPR027040
CDD
cd01452
1 188 188 2.18E-106 –
SMART
SM00327
2 175 174 3.40E-12
IPR002035
SUPERFAMILY
SSF53300
4 170 167 7.41E-36
IPR002035
ProSiteProfiles
PS50234
5 189 185 10.411
IPR002035
Pfam
PF13519
6 114 109 7.60E-28
IPR002035
Gene3D
G3DSA:3.40.50.410
7 155 149 8.80E-07
IPR002035
SMART
SM00726
222 241 20 11
IPR003903
ProSiteProfiles
PS50330
222 241 20 8.935
IPR003903
Pfam
PF02809
224 237 14 0.54
IPR003903
Coils
Coil
232 257 26 – –
MobiDBLite
mobidb-lite
242 285 44 – –
SMART
SM00726
290 309 20 4.8
IPR003903
ProSiteProfiles
PS50330
290 309 20 8.718
IPR003903
Pfam
PF02809
290 304 15 0.042
IPR003903
MobiDBLite
mobidb-lite
303 325 23 – –
SMART
SM00726
322 341 20 190
IPR003903
MobiDBLite
mobidb-lite
364 403 40 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0008540
Cellular component Proteasome regulatory particle, base subcomplex The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex.
Subterm of
Part of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj2g3v1691080.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1691080.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.